FMO10591.5prime Sequence
1154 bp (887 high quality bases) assembled on 2010-12-06
> FMO10591.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGCCAGTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTTG
GCGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGG
CGTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCG
GAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGAATACGCC
GAGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAA
GAATGGGCGCATTATCCAGGAGATTGTGGACAAGAGTGTCGTGTTTTCGA
ATCAAGGTTGAGTGCTATCGCTGGCGACGAATGAACAGGATTAAGAACAT
ATCCACGTGGAGCTGGCGCATAGTACCTCTTTGTGTTCCATTGGCACGGT
GGAGAGCATTGCAAATGCCAAAGTGGCTGTTGGGAGTTTCATCTGTCCGC
ACCCTGAAGGAAGTAAAAACAGTTTGCGTTCAGGAAAAAGATGGGAAATT
GATCAGCACCTTCGCGCCATCCATGAATTCCTCCAATGGGCCTCCCACAC
AAAAGCTTCCCAAGTGACGCGGGCCGCTTTGAGCGCGGCCTTCAAGCAAT
GAAC
FMO10591.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmr1-RF | 3773 | CG6203-RF | 177..1280 | 9..1139 | 4825 | 96.6 | Plus |
Fmr1-RA | 3381 | CG6203-RA | 683..1786 | 9..1139 | 4825 | 96.6 | Plus |
Fmr1-RG | 4426 | CG6203-RG | 683..1777 | 9..1139 | 4690 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10105790..10106100 | 319..9 | 1555 | 100 | Minus |
3R | 32079331 | 3R | 10105067..10105370 | 858..553 | 1415 | 99 | Minus |
3R | 32079331 | 3R | 10105557..10105724 | 487..320 | 840 | 100 | Minus |
3R | 32079331 | 3R | 10105434..10105505 | 553..482 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7269..7350 | 617..699 | 115 | 63.1 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8722..8803 | 617..699 | 115 | 63.1 | Plus |
FMO10591.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:08:03 Download gff for
FMO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RF | 141..1225 | 2..1112 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:02 Download gff for
FMO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1762 | 2..1112 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:04 Download gff for
FMO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmr1-RA | 678..1762 | 2..1112 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:04 Download gff for
FMO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10105060..10105369 | 554..866 | 98 | <- | Minus |
3R | 10105434..10105501 | 486..553 | 100 | <- | Minus |
3R | 10105559..10105724 | 320..485 | 100 | <- | Minus |
3R | 10105790..10106103 | 2..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:02 Download gff for
FMO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5930782..5931091 | 554..866 | 98 | <- | Minus |
arm_3R | 5931156..5931223 | 486..553 | 100 | <- | Minus |
arm_3R | 5931281..5931446 | 320..485 | 100 | <- | Minus |
arm_3R | 5931512..5931825 | 2..319 | 98 | | Minus |