Clone FMO10596 Report

Search the DGRC for FMO10596

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:105
Well:96
Vector:pMK33-CFH-BD
Associated Gene/TranscriptFmr1-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10596.5prime Sequence

1102 bp (795 high quality bases) assembled on 2010-12-06

> FMO10596.5prime
CAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGCCCGAGGAA
ACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAAGTGGAGGT
GTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGTGGGCATTA
TTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCGGTTTTGAG
ACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCCAAAAACTC
GAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCTGCCCGTGC
CCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACAAGGAGTTT
CAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGATCTGGACGC
CCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCTAGCCTTTATGC
TCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGCTGTTGAAA
AGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTGATGAGCCG
TGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCATGGGTTTGG
CGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTGTGGACGGC
GTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAAATCAGCGG
AGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTTGAATACGCCG
AGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGATTGGCAAG
ATGGGCGCATATCCCAGGAGATTGTGGACAAGAGTGGCGTGTTTCGAATC
AAGGTGAGTTGCTATCGCTGGCGACGATGAACAGGATTCAGAACATACAC
GTGAGCTGGCGCATGTACCCTTTGTGTTCATTGCACCGGGAAAAGCATTG
CAAATGCAAAAGTGCTGTTGGAAGTATATCTTGTCCCACCTGAAAGAAAG
TAAACATTGCCTCCGAAAAGAATGGAAATTGATCACAGCTTTCCGCATCA
AGAAATCCTCCAATGGACCTCAACAACAAGCTTTCCAATGTGAACCCGGC
TC

FMO10596.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Fmr1-RF 3773 CG6203-RF 177..1233 9..1062 4625 96.7 Plus
Fmr1-RA 3381 CG6203-RA 683..1739 9..1062 4625 96.7 Plus
Fmr1-RG 4426 CG6203-RG 683..1730 9..1062 4490 95.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10105790..10106100 319..9 1555 100 Minus
3R 32079331 3R 10105063..10105370 859..553 1430 98.4 Minus
3R 32079331 3R 10105557..10105724 487..320 795 98.2 Minus
3R 32079331 3R 10105434..10105505 553..482 360 100 Minus
3R 32079331 3R 10104901..10105010 972..864 345 93.7 Minus
Blast to na_te.dros performed 2014-11-26 17:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7269..7350 616..698 115 63.1 Plus
TART-C 11124 TART-C TARTC 11124bp 8722..8803 616..698 115 63.1 Plus

FMO10596.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:07:57 Download gff for FMO10596.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RF 141..1110 2..972 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:25:47 Download gff for FMO10596.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 678..1647 2..972 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:54:47 Download gff for FMO10596.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmr1-RA 678..1647 2..972 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:54:47 Download gff for FMO10596.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10104879..10105010 864..996 91 <- Minus
3R 10105060..10105369 554..863 98 <- Minus
3R 10105434..10105501 486..553 100 <- Minus
3R 10105559..10105724 320..485 98 <- Minus
3R 10105790..10106103 2..319 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:25:47 Download gff for FMO10596.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5930601..5930732 864..996 91 <- Minus
arm_3R 5930782..5931091 554..863 98 <- Minus
arm_3R 5931156..5931223 486..553 100 <- Minus
arm_3R 5931281..5931446 320..485 98 <- Minus
arm_3R 5931512..5931825 2..319 98   Minus