FMO10602.5prime Sequence
1180 bp (1019 high quality bases) assembled on 2011-06-24
> FMO10602.5prime
CAGTCGACATGGCAACGGATGTGCAATCTTTTTACAAAGACAAAACTGTC
TTCCTAACAGGCGGCAGTGGATTCCTTGGAAAAGTGACCATTGCGAAGCT
GCTCTGCACCACCGAGGTGAAGCGCATCTATGTGCTGCTCCGTGCCAAAC
GCGGCCAGGAAATGCGGGAGCGATGCGCCGCATGGGATAAGGATCCGGTA
TTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGCGTGGTACC
TTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAACAGCGATC
GTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGGCGGCCACT
GTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAACACCCGAGC
CACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTTGGAGTCCT
TTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGCACGTAAGT
GAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAGATCCTAGA
GCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGCACCGGCGC
TGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTCTGACGGAG
CAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATTTTTCGTCC
GGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGATCGACA
ACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCGGAATACTG
CATATCACACTGCTTAATCTTAAGCCCAGGCTGGAATTGTACCCGTGGAT
TACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGCCCGGGATAC
AAGTATCTAGCTATCGCCGGAGCACCTATCTACAATTTTACGCCAAAATA
ATGATAACCTGATAACCTGGGGTGATTTCGGGACAAGGCGCGAGGCTGCG
GTACACGTATCCACTGACCAGATGATGGTGGTTGCCGTTTCTGCCATGCA
ACCACATTCCCTGCCTATTCCGGTCACAGCATTCTTTTTATCACTTGCTC
CCCGGCCTATGCATTTGAATCTGCCTTGCCGTTTATTGGGCCAAAAGCCA
GTAGGATCCAGTGTACGACAGATTCCAAGA
FMO10602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 2358 | CG10096-RD | 110..1274 | 9..1170 | 5225 | 97.4 | Plus |
| CG10096-RB | 1841 | CG10096-RB | 110..1274 | 9..1170 | 5225 | 97.4 | Plus |
| CG10097-RC | 4716 | CG10097-RC | 3059..4149 | 83..1170 | 4855 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391848..12392359 | 708..197 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12391392..12391792 | 1106..709 | 1405 | 95 | Minus |
| 3R | 32079331 | 3R | 12392456..12392573 | 200..83 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 12392827..12392902 | 84..9 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 318..549 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 318..484 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 388..669 | 240 | 72.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:43:29 has no hits.
FMO10602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:46 Download gff for
FMO10602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 102..1232 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:44 Download gff for
FMO10602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 102..1232 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:14 Download gff for
FMO10602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 102..1232 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:14 Download gff for
FMO10602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12391370..12391792 | 709..1129 | 94 | <- | Minus |
| 3R | 12391848..12392358 | 198..708 | 100 | <- | Minus |
| 3R | 12392459..12392571 | 85..197 | 100 | <- | Minus |
| 3R | 12392827..12392910 | 1..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:44 Download gff for
FMO10602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8217092..8217514 | 709..1129 | 94 | <- | Minus |
| arm_3R | 8217570..8218080 | 198..708 | 100 | <- | Minus |
| arm_3R | 8218181..8218293 | 85..197 | 100 | <- | Minus |
| arm_3R | 8218549..8218632 | 1..84 | 96 | | Minus |
