Clone FMO10604 Report

Search the DGRC for FMO10604

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:4
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCyp4e1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10604.5prime Sequence

1160 bp (1021 high quality bases) assembled on 2011-06-24

> FMO10604.5prime
CAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTCCACTGTTC
TTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGAATGCTGAA
CAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGCTCATCAGA
TGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCTGGTGGCAT
GAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTACTCCAATAT
TATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAGTCAAACTC
TGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGCTGGGATTG
GGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGGAAGATGAT
AACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGAGGTCATGA
ACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGGCAGACGGA
GGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACTCTGGACGT
CATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGAAAACCGAA
GTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCATTAAGATG
AGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCACTTTGCTCC
TGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGACTTTACCAA
TGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGCTTGAAGTCGG
CATTAAGCTGACGAGTTCTCCCGCAAGAAATGGCATTTTTGGACACTCTG
CTGTCATCCAAAGTGGATGGACGTCCTCTGACTTCCCAAGAGCTTTACGA
GGAAGTTTCCACCTTTTGTTTGAACGCATGACACTACTACATCTGGTGTA
GTTTGCAGTCTACTTACTTTCTCGACATCAGATGAACAGGAAAATTATTT
AACGAGCAGTGCGATGTGATGGGCCCCTTCTGGACTTGGTCGAAATGCCA
CGTTCAAGAAAAATCCCAAATGAAACATTTGGATTGTTTAAAAGGAGGCC
CACCGTCTTTTATCGATGTTCCCTTTCATTGTTGCCTTTTACCGTGAAAG
GACTACGTAT

FMO10604.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 53..1213 9..1159 5115 97 Plus
Cyp4e2-RB 1880 CG2060-RB 272..1271 123..1110 1410 77.3 Plus
Cyp4e2-RA 1783 CG2060-RA 175..1174 123..1110 1410 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8448101..8448452 277..628 1760 100 Plus
2R 25286936 2R 8448527..8448897 629..990 1425 97.3 Plus
2R 25286936 2R 8445532..8445883 277..628 950 84.7 Plus
2R 25286936 2R 8447503..8447662 9..168 800 100 Plus
2R 25286936 2R 8447930..8448042 166..278 565 100 Plus
2L 23513712 2L 9749185..9749442 593..336 480 79.1 Minus
2R 25286936 2R 8448964..8449106 991..1131 295 86.8 Plus
2R 25286936 2R 8446145..8446312 828..990 190 79.8 Plus
Blast to na_te.dros performed 2014-11-26 23:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 4838..4952 705..818 112 61 Plus

FMO10604.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:48 Download gff for FMO10604.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 27..1195 1..1160 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:48 Download gff for FMO10604.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 45..1213 1..1160 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:18 Download gff for FMO10604.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 45..1213 1..1160 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:18 Download gff for FMO10604.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8447495..8447662 1..168 98 -> Plus
2R 8447933..8448042 169..278 100 -> Plus
2R 8448103..8448452 279..628 100 -> Plus
2R 8448527..8448896 629..989 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:48 Download gff for FMO10604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4335000..4335167 1..168 98 -> Plus
arm_2R 4335438..4335547 169..278 100 -> Plus
arm_2R 4335608..4335957 279..628 100 -> Plus
arm_2R 4336032..4336401 629..989 97 -> Plus