FMO10606.5prime Sequence
723 bp (-88 high quality bases) assembled on 2011-06-24
> FMO10606.5prime
CAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTTTATATATT
GTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTGTTGGGCTC
GATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAGTGGGACGG
ACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCCTCATCTTC
GTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGTGTCTGCAT
GACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCTGCAACTGG
TGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGGGCGATATG
TCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACTGCCATGGG
CGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTATACCAACT
ACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCTACCTGGAC
CGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGGCCCGGCTG
CAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACATCATCCGCT
GGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCCTCATCGCC
GGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAGGTCGCCAGGTGTA
CGCCGCAAGCTTTTCTAGACCAT
FMO10606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ec-RA | 1025 | CG12847-RA | 132..827 | 9..704 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7007980..7008424 | 260..704 | 2225 | 100 | Plus |
| 2R | 25286936 | 2R | 7007725..7007917 | 68..260 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 7001437..7001514 | 68..145 | 390 | 100 | Plus |
| 2R | 25286936 | 2R | 7000285..7000344 | 9..68 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 7006573..7006632 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:43:45 has no hits.
FMO10606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:48 Download gff for
FMO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ec-RA | 119..829 | 1..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:50 Download gff for
FMO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ec-RA | 124..834 | 1..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:20 Download gff for
FMO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ec-RA | 124..834 | 1..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:20 Download gff for
FMO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7006565..7006632 | 1..68 | 94 | -> | Plus |
| 2R | 7007726..7007917 | 69..260 | 100 | -> | Plus |
| 2R | 7007981..7008431 | 261..712 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:50 Download gff for
FMO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2895231..2895422 | 69..260 | 100 | -> | Plus |
| arm_2R | 2895486..2895936 | 261..712 | 99 | | Plus |
| arm_2R | 2894070..2894137 | 1..68 | 94 | -> | Plus |
