FMO10608.5prime Sequence
1079 bp (925 high quality bases) assembled on 2011-06-24
> FMO10608.5prime
TCGCAATCGCGCAGTGGCGGGGGGCGTGGCGGTCAGGAGTACTCGAACGA
CGACGATCCGCCGATGTCGCGTCTCTTCATCATTTGCAACAAGGCGCACA
CCGAGGAGGATTTCCGTGAAGCCTTCTCTCCATACGGCGAAATCGAGGAT
ATCTGGGTGGTGAAGGACAAGCACACCCAGGAGAACAAGGGAATCGCGTA
CGTCAAGTTCTCCAAGACATCCGATGCTGCCAAGGCACAGGAGGAGATGA
ACGGCAAGACCATTGGCAAGATGGATCGCACCCTTAAAGTCCTGGTGGCA
GCCAATCGCAATCAGGGCTCAAATAAGTCTGAGAACGAGCAGGAGAAGTA
CGTGAGACTCTTCATAGTGATCCCCAAAACAGCCACCGAGGAGGATATTC
GCGAGGAATTCTCGCAGTGGGGCGATGTGGAATCTGTCACAATTGTCAAG
GAGAAGAACAATGGCAATCCCAAGGGCTTCGGATATGTCCGCTTTACCAA
GTTTTACTATGCAGCTGTGGCTTTCGAAAACTGCTCCGCCAAGTATAAAG
CTGTCTTTGCCGAGCCAAAGGGTTCTACACGCACACAGCGTGACCAGTAC
GGCCGTCCCTCCGAGGACAATCCCTTGTATAGCAGCTCGGGACGTGGCAA
TTCCAATTTCAATGGAGGCGGTAGCAGCAGCGGTGGCGGCGGCAGCAACA
GCTACAACAACGACTGGGAATGTATCGCAGAACAACGACATGGCGGCCTT
CCTGCGCATGCAGAATGTGCCAGTGGCCCAGCCATCCTGTCTGGAGGTTA
ACGTGAGCAACTGCGTCAACCCAGGATCAGCTCTGGCGTCTCTTCTACAT
ATTTCCCGGCTTGGATTACTGCCAAATCATGCGCGAACATGGACCGCGCA
CCAATGAGCTTATTGTGTACGACACCCAGAAGCCGCCATTTTGCCAAGGA
CAAACTTCATGGCCTGGAAGTACCCAATGGGCGACCGCCATCATTGTCAA
GTCAATGGAATGTACCTCAGCTCGCATGTACCCATCCCTCACTAGACAGC
GACCAAAAGATGCCATCTGCCAATGTTCC
FMO10608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-RA | 2222 | CG1316-RA | 129..1210 | 1..1079 | 4890 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4284605..4284990 | 501..888 | 1810 | 99 | Plus |
| 3L | 28110227 | 3L | 4283979..4284283 | 1..305 | 1495 | 99.3 | Plus |
| 3L | 28110227 | 3L | 4284343..4284543 | 302..502 | 990 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4285175..4285266 | 948..1041 | 200 | 90.5 | Plus |
Blast to na_te.dros performed 2014-11-26 23:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6830 | 668..742 | 120 | 65.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 673..714 | 120 | 76.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 668..714 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6779 | 636..711 | 115 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 660..711 | 113 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2407 | 673..740 | 112 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6758 | 672..711 | 110 | 75 | Plus |
FMO10608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:49 Download gff for
FMO10608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 125..1206 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:52 Download gff for
FMO10608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 129..1210 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:21 Download gff for
FMO10608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 129..1210 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:21 Download gff for
FMO10608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4283979..4284283 | 1..305 | 99 | -> | Plus |
| 3L | 4284347..4284541 | 306..500 | 100 | -> | Plus |
| 3L | 4284605..4284990 | 501..888 | 98 | -> | Plus |
| 3L | 4285053..4285116 | 889..947 | 90 | -> | Plus |
| 3L | 4285175..4285280 | 948..1058 | 85 | -> | Plus |
| 3L | 4285439..4285458 | 1059..1079 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:52 Download gff for
FMO10608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4283979..4284283 | 1..305 | 99 | -> | Plus |
| arm_3L | 4284347..4284541 | 306..500 | 100 | -> | Plus |
| arm_3L | 4284605..4284990 | 501..888 | 98 | -> | Plus |
| arm_3L | 4285053..4285116 | 889..947 | 90 | -> | Plus |
| arm_3L | 4285175..4285280 | 948..1058 | 85 | -> | Plus |
| arm_3L | 4285439..4285458 | 1059..1079 | 95 | | Plus |
