FMO10611.5prime Sequence
900 bp (900 high quality bases) assembled on 2011-06-24
> FMO10611.5prime
CAGTCGACATGAAATTCGCCTGCGCTACGGTTCTGCTCTTGGCCACCATT
CTTGGGGCCCAGGCTGTGGACTGGAATTCGGTCAAGAACCTGAACATCGA
GACCCCGATGCCCAAGGTCCATGGCGAGACCCTGCCCAGCGGTAGGATTA
CTGGAGGACAGATTGCCGAGCCCAACCAGTTCCCCTACCAGGTGGGACTA
CTGCTGTACATCACTGGAGGAGCTGCCTGGTGCGGAGGCACCATCATCAG
TGACCGCTGGATCATCACCGCCGCCCATTGCACGGACAGCCTGACCACCG
GAGTGGATGTCTACCTGGGCGCCCACGATCGCACCAACGCCAAGGAGGAG
GGACAGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTGCACGAGGA
TTGGATAGCCGAGACCATCACCAACGACATTTCCCTGATCAAGTTGCCAG
TGCCCATTGAGTTCAACAAGTACATCCAGCCCGCTAAGCTGCCCGTGAAA
TCCGACAGCTACAGCACCTACGGCGGAGAGAATGCCATTGCCTCCGGATG
GGGCAAGATCAGCGACTCTGCTACCGGAGCGACCGACATTTTGCAGTACG
CTACGGTTCCCATCATGAACAACAGCGGCTGCTCTCCCTGGTACTTCGGT
CTGGTTGCCGCCAGCAACATTTGCATCAAGACCACCGGCGGAATTTCCAC
CTGCACCGGCGACTCCGGCGGTCCTTTGGTCCTGGATGACGGCAGCAACA
CCCTGATTGGAGCCACCTCCTTCGGCATTGCTCTCGGCTGCGAGGTGGGA
TGGCCCGGTGTCTTCACCCGTATCACCTACTACCTGGAACTGGAATCGAG
AGAAGAAGTGGTGTGGTCAACTAACGGCGACGCAAGCTTTCCTAGACCAT
FMO10611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10472-RA | 936 | CG10472-RA | 18..887 | 9..881 | 4215 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6062434..6062893 | 468..9 | 2285 | 99.8 | Minus |
| 3L | 28110227 | 3L | 6061430..6061731 | 871..568 | 1345 | 97.7 | Minus |
| 3L | 28110227 | 3L | 6062274..6062372 | 567..469 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:43:20 has no hits.
FMO10611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:45 Download gff for
FMO10611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 7..891 | 1..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:39 Download gff for
FMO10611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 11..895 | 1..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:11 Download gff for
FMO10611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 11..895 | 1..890 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:11 Download gff for
FMO10611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6061413..6061731 | 568..890 | 97 | <- | Minus |
| 3L | 6062274..6062372 | 469..567 | 100 | <- | Minus |
| 3L | 6062434..6062899 | 1..468 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:39 Download gff for
FMO10611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6054513..6054831 | 568..890 | 97 | <- | Minus |
| arm_3L | 6055374..6055472 | 469..567 | 100 | <- | Minus |
| arm_3L | 6055534..6055999 | 1..468 | 98 | | Minus |
