FMO10615.5prime Sequence
1161 bp (1046 high quality bases) assembled on 2011-06-24
> FMO10615.5prime
CAGTCGACATGGCGGCAATTACTAGCAATGTGTCGCGATTGGAGCCAATG
CGCGGTATTTCCATAATCATTGAATCGCCAGAAGTGGCAACGGCAACACC
ACCACCAGCAACAACAACCGCAACTGCCGAAGCAGAAGCCGCAACAAAAC
AAGTAGCACCAACTGCCAAGAGCAACAGCAACACTGAAATGTCGCTCAAG
TCACAGGCTGCTGGCATGTTGCTGGCATTTGGCGACACAGCAGCAACAGC
CAAAGATAATTTGGAAACTAGTTACGACACTGCAGCAAAGTCGACAGCAG
CACCAGAGACCAACAAAATCTATCCGCAGTTACTGTTGCGCATTGGCGGA
GAAATTGCCGGTGCAACAGCATCAGCAGAAGCAGCAGCATCAGCAGCAAC
AGCAGCAGCAGCAACAGCAACATCACCGACCATAATCAGCTGCAATGGTG
AAATTGCCGCCAGTCAAGCAGCAGCAACAGCAGCGGACACAGCGGCAACA
TTGCAACACAACAATACGGTGAAGATTCAAATCGAAAGCCAGGGTCAGCA
GCGAACACTGGGCAAGCAGATAAGTGTGGTGAAGCTGAACGAGGGCGTGG
AGGAGATGCAGCAGCACATGTGCTATTTGGTGGACACCAGTGGCCAGTAC
TCGCCCTGCGAGACCTTGGACAGTGGCACGGGCAGCGATCTGGAGAATCA
TCCGCAGCAGCAGCAGCAGCCGCAACAGGTGAGATCACCGCAACTGGAGC
TTCATCTGCAGACCACGCGGCTGATGGTCAACGAGGAGGCGGACCATAAG
CACAGCCCGCTGGAGACGCCGAGTCCCGTTCCGAAGCGAGCATATAGCCT
CACCGATGACAGCGAGGAATGCGATGAGAGCAGCAACTCATCGCTAAGCT
GCGATTCCCTGCACTCTGGTGGCCTGCTGCCCACTACCCTGCTGCGGGAT
ATTCGATTCAGAACGAGCGTCCGGTCCTCTGGTCACCCAAAATCAATGGC
AGACATTGCAATTCGAAACGGATGGCTATTACACATTCCATGTGCGCGAA
CACGAGAATTTCCGGAGTTTTGGTTCCATTCCCCGAATCGAATACGAAAG
CCGCAACCTTTACCGATGAACAGCGGTGGAGGATTTGTTTGCCTTAGGCT
CGACGTCGGCA
FMO10615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12206-RC | 2348 | CG12206-RC | 302..1432 | 8..1136 | 5315 | 98.4 | Plus |
| CG12206-RB | 2653 | CG12206-RB | 607..1737 | 8..1136 | 5315 | 98.4 | Plus |
| CG12206-RA | 2416 | CG12206-RA | 370..1500 | 8..1136 | 5315 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3472077..3473149 | 1078..8 | 5205 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-26 23:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2982 | 86..744 | 421 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6921 | 363..557 | 323 | 66.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 280..484 | 307 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2869 | 88..513 | 305 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2627 | 363..640 | 304 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6921 | 243..516 | 302 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6942 | 389..616 | 288 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2886 | 238..756 | 285 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6864 | 366..511 | 281 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2517 | 363..558 | 276 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2527 | 287..513 | 266 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2482 | 387..564 | 255 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2430..2951 | 79..565 | 251 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..7221 | 79..537 | 250 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7007 | 87..304 | 248 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7032 | 238..513 | 242 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6828 | 78..183 | 237 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6643..7180 | 15..569 | 215 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1159 | 398..501 | 196 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2809 | 88..513 | 188 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1149 | 94..183 | 187 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..3031 | 88..479 | 185 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2889 | 80..182 | 178 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6996 | 79..248 | 174 | 60.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1091..1158 | 79..146 | 169 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1596 | 79..189 | 168 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6822 | 399..513 | 164 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2401 | 417..513 | 157 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1173 | 467..537 | 136 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1025..1146 | 377..500 | 134 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6860..6947 | 79..169 | 133 | 62.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1173 | 79..137 | 133 | 69.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 510..568 | 88..146 | 133 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1587 | 61..133 | 126 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6856 | 467..569 | 123 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1613 | 88..171 | 119 | 65.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 499..561 | 65..127 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6774 | 456..508 | 116 | 71.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1125 | 467..500 | 116 | 82.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8026 | 91..174 | 114 | 59.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9470 | 91..174 | 114 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1608 | 465..517 | 112 | 67.9 | Plus |
FMO10615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:02 Download gff for
FMO10615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RC | 296..1394 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:34:15 Download gff for
FMO10615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RA | 364..1462 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:10 Download gff for
FMO10615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RA | 364..1462 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:10 Download gff for
FMO10615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3472073..3473155 | 1..1081 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:34:15 Download gff for
FMO10615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3366106..3367188 | 1..1081 | 99 | | Minus |
