Clone FMO10616 Report

Search the DGRC for FMO10616

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:16
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10616.5prime Sequence

356 bp (356 high quality bases) assembled on 2011-06-24

> FMO10616.5prime
CAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTGAGGAGGAG
AAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAACAATGCACT
GGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTATGACTATT
TCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCGATGAGCTG
GAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCCGACGACAA
TAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAATTACCGGTG
GCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCGCAAGCTTTCTA
GACCAT

FMO10616.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 1060 CG12817-RB 250..582 6..338 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10224151..10224294 213..70 720 100 Minus
3R 32079331 3R 10223918..10224048 338..208 640 99.2 Minus
3R 32079331 3R 10224350..10224416 72..6 335 100 Minus
Blast to na_te.dros performed on 2014-11-26 23:38:13 has no hits.

FMO10616.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:02 Download gff for FMO10616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 232..570 1..342 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:34:44 Download gff for FMO10616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 247..585 1..342 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:13 Download gff for FMO10616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 247..585 1..342 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:13 Download gff for FMO10616.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10223915..10224042 214..342 98 <- Minus
3R 10224151..10224292 72..213 100 <- Minus
3R 10224351..10224418 1..71 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:34:44 Download gff for FMO10616.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6049637..6049764 214..342 98 <- Minus
arm_3R 6049873..6050014 72..213 100 <- Minus
arm_3R 6050073..6050140 1..71 95   Minus