FMO10618.5prime Sequence
1148 bp (1027 high quality bases) assembled on 2011-06-24
> FMO10618.5prime
CAGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTACTGGTCGGA
TTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGCGGTGAGCG
CATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGTCACCAGTG
ACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCAAAACGGGT
GAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATGCTGAGTTC
TTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGCCTATATGC
TGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAGGCAACACC
TACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATCTTCTGGAA
CTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGATGATTGATT
ATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGGGCCACTCC
CAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCCGAGTACAA
TGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTATATGGGCA
ACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGGGCCAGCCC
AATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCCAGCAATAA
GTTCAAGCAGATTTGGGCATAGAGATGTGCCAGGCCACTTCTCCTTATGC
CGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATGATACCGAAC
AGCTGGACTACGAACTCCTTGAGCACATCAAAGCCACGTCTCCGGCTGGC
GCATCGGTGAACCAAACTTGCACTTTTGTCAGGATATAACTCTGGAAGTT
CCGTAATTCGACTACACCGCTCTCCGTATCCCTATGAGTACGCAGCTACT
TCCCTCCGGATTACAAGCTAAGAATGCCAAGGCCCCGGGTTCTATTGTAC
TACGAGCCAATGACTGATGGTGCGATGTGAGCGAATGTCGCAAGTTGAGA
GACGAACTGCCCACATGGCGCTGACTACCTTGTTCGGTTCGCGAAAGTTG
GCATTCTGATTCATTGGGGCACTGAGGCCCGAAATACGTCTCACACGA
FMO10618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lip3-RA | 1434 | CG8823-RA | 159..1305 | 9..1141 | 5070 | 97.3 | Plus |
| CG8093-RB | 1555 | CG8093-RB | 311..445 | 224..358 | 240 | 78.5 | Plus |
| CG8093-RA | 1334 | CG8093-RA | 311..445 | 224..358 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13370788..13371508 | 812..93 | 3555 | 99.9 | Minus |
| 3R | 32079331 | 3R | 13370419..13370711 | 1095..812 | 740 | 92.2 | Minus |
| 3R | 32079331 | 3R | 13371662..13371746 | 93..9 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 15215170..15215304 | 358..224 | 240 | 78.5 | Minus |
| 3L | 28110227 | 3L | 20460995..20461065 | 285..355 | 220 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:38:17 has no hits.
FMO10618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:03 Download gff for
FMO10618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip3-RA | 154..1311 | 1..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:35:13 Download gff for
FMO10618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip3-RA | 154..1311 | 1..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:14 Download gff for
FMO10618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip3-RA | 154..1311 | 1..1147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:14 Download gff for
FMO10618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13370789..13371508 | 93..811 | 99 | <- | Minus |
| 3R | 13371663..13371751 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:35:13 Download gff for
FMO10618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9196511..9197230 | 93..811 | 99 | <- | Minus |
| arm_3R | 9197385..9197473 | 1..92 | 95 | | Minus |
