FMO10625.5prime Sequence
920 bp (920 high quality bases) assembled on 2011-06-24
> FMO10625.5prime
CAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCACGGCGCGC
AGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGATTCATCAAG
AATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCGAAGTCGTG
ATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGCTGATCACG
CTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTACGTGGAACT
CAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTATTTTGGCA
ACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCCATCTCGTC
GTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGTCTGACCAT
TCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACATTGGAGTGC
AGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGATGCGCACC
ATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATCCAATCCAA
TTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGGCTGGGACT
GGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTATGGGCGAC
TATGGCCGGTTTAAGCCCGGTCCCAAACAGCTGGAAGGTGTCCAATTTCT
GCTGGCCCATGCAGTGGCCAATCGAAATATTGATGTGGACTACAAACTAG
TGGCGCAAATCAGACTAAGGTGACCAGAAGCCCGGGTTGCATATGTGTAT
CAAGAAATCCGGAACTGGCCGCATTTCTACGGCTGCGGAATGACGAGCAC
CGGGCCTGCGGCATCGAATTGGGCATGAAACGGAATCGTGGACGCCAAGC
AAGCAAGCTTTTCTAGACAT
FMO10625.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LA-RF | 1606 | CG32042-RF | 239..1136 | 8..902 | 4325 | 99.2 | Plus |
| PGRP-LA-RC | 1593 | CG32042-RC | 238..1123 | 8..902 | 4135 | 97.9 | Plus |
| PGRP-LA-RG | 945 | CG32042-RG | 68..875 | 98..902 | 3875 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9336986..9337223 | 322..559 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 9336712..9336933 | 100..321 | 1110 | 100 | Plus |
| 3L | 28110227 | 3L | 9337454..9337655 | 558..759 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 9336292..9336384 | 8..100 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 9337723..9337866 | 761..902 | 450 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:38:47 has no hits.
FMO10625.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:07 Download gff for
FMO10625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LA-RF | 233..1154 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:38:11 Download gff for
FMO10625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LA-RF | 233..1154 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:26 Download gff for
FMO10625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LA-RF | 233..1154 | 1..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:26 Download gff for
FMO10625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9336986..9337221 | 322..557 | 100 | -> | Plus |
| 3L | 9337454..9337660 | 558..763 | 99 | -> | Plus |
| 3L | 9337726..9337884 | 764..915 | 93 | | Plus |
| 3L | 9336286..9336383 | 1..99 | 96 | -> | Plus |
| 3L | 9336712..9336933 | 100..321 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:38:11 Download gff for
FMO10625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9329386..9329483 | 1..99 | 96 | -> | Plus |
| arm_3L | 9329812..9330033 | 100..321 | 100 | -> | Plus |
| arm_3L | 9330086..9330321 | 322..557 | 100 | -> | Plus |
| arm_3L | 9330554..9330760 | 558..763 | 99 | -> | Plus |
| arm_3L | 9330826..9330984 | 764..915 | 93 | | Plus |
