Clone FMO10626 Report

Search the DGRC for FMO10626

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:26
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCycJ-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10626.5prime Sequence

808 bp (808 high quality bases) assembled on 2011-06-24

> FMO10626.5prime
CAGTCGACATGGAGCAGAAAGTGGCTGCCGAGCAGAACATCTTCGTCGTC
GACCGCAAATTGAAGAAAACTTGCCCGCAAGCAGATGTCGAGCGCCTGGC
TAAGACGCACTGGCTCACCGACTATGCCCGGGATATATTTTTGACCATGA
GGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTTACCTTTCGCCGCAGCTG
AACGAGCGCCGAAGAATGCTGCAGTTGCTCAAACTGGCGACCAGCGCCCA
CAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGTCTACTATATGGATCGCT
TTGTTGATTACTACAAAATCCGTCCGGACAAATTGCTCCTGGTGGCCATC
ACTTGTCTTCATATAGCTGCGCAGATCGAAAACACGGATGCGTTTATTCC
GCGCTACAGCGAAATGAACCGATTGGTCAAGAACGCCTATACGGCATTCG
AGTACAAGGCTGTGGAAAGGAAGATCCTGTGCTTCCTGAACTTCGAGCTA
ATACGTCCCACCACCGCCAGTTTTGTGGAGCTCTTCGCCTGCAGTTTTCT
CACTCGCTCCGATTTCAAGAACTACATCGAGATGTTGGATGAGTACGAGC
GGAACCATCACAGCCAGCCGTACCAGCGATATATAAGCTTCGAAGAGATG
CTGTCCATTTTGGCGCAGTTGCTCCTTCGCATGGCGGATTATACATTGTA
CAATTTGCCAACGATCTGCCATCCCTTTTGGCTGCCGCCTGCATTGCTGC
AGTTCGCCAGGTCAGCGGGGTCAGCGCTGGTCGGAGTACCGCAAGCTTTC
TAGACCAT

FMO10626.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 1471 CG10308-RB 112..894 9..790 3875 99.7 Plus
CycJ-RA 1478 CG10308-RA 112..901 9..790 3795 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3466949..3467372 279..702 2105 99.8 Plus
3L 28110227 3L 3466684..3466872 91..279 945 100 Plus
3L 28110227 3L 3466539..3466622 9..92 420 100 Plus
3L 28110227 3L 3467433..3467521 703..790 395 98.9 Plus
Blast to na_te.dros performed on 2014-11-26 23:38:51 has no hits.

FMO10626.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:08 Download gff for FMO10626.5prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 126..913 9..798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:38:41 Download gff for FMO10626.5prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..899 9..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:27 Download gff for FMO10626.5prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..899 9..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:27 Download gff for FMO10626.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3466539..3466622 9..92 100 -> Plus
3L 3466686..3466872 93..279 100 -> Plus
3L 3466950..3467372 280..702 99 -> Plus
3L 3467433..3467526 703..798 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:38:41 Download gff for FMO10626.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3466686..3466872 93..279 100 -> Plus
arm_3L 3466539..3466622 9..92 100 -> Plus
arm_3L 3466950..3467372 280..702 99 -> Plus
arm_3L 3467433..3467526 703..798 94   Plus