FMO10630.5prime Sequence
1109 bp (1016 high quality bases) assembled on 2011-06-24
> FMO10630.5prime
CAGTCGACATGGGCGACTATCACGAGTTCACGGACCAGTACAAGGTGCCG
GTGATAGCGAAGCTACTCCACGCCCTGCCCCACTATAACATCACGTTCCA
CAAGATCAACAGCACGTTCCGGCCCAACGATGAGATCTACCTGGAGAGCC
TGGGCATTCTGGGCTCGGTTCCGGCTGCCCTGCTGATCGTCTCGCTGCTG
GGACTGCTCTTCTATCTCATGACCCGCTGCTGTGACCGGAAGCCCCGGCC
AGCCCACTCGATCACTAGCCTGAAGGTGGCCCTGTCCATTGTGACGGTGA
TGTGCTGCGCGGCGATTGGATTGGGATTATATGGGAACGATGATCTGCAC
AACGGACTGCTGGAGGTGCTGACGGCGGGCAGGAAGGTGGACAATCTAGT
CACGACCATCCGCAATCAGACGCACATCTTGGAGAACACGCTGACGAATC
GCATACGGCCGCAGCTGGTGGAACTGGCGGACATCTTCGATCAGCCGGTG
TCGAACCAAACTGCCCTCTCCAAGCTCTTTGTGTCGCTCAATATTGTCCA
GGGAAATGTTACCCTAGCCACCAATGCGGCCAGCGATATCAGACGACCCC
TGATGGGCATTTCCATGACGCACTTCCTCACGCGCGGCGACCAATGGGAA
CTCATCCGCTGGCCGGGCACGGTGGCCACCTTGGCCCTGCTACTTGTCTT
GTGTGCCGTGCTGCTGGTGGGCGTGGCCCGGCACTCGCGATGCGCCCTAA
TCCTGTTCAGCGTGTGCGGCTTGCTAGCCGTCACCGGTTCGTGGCTCATG
TCCGGTCTGTATCTCTCCTCCTCGGTGGCTGTCGGCGATCTGTGCATCTC
ACCAGCGGATTTTCTGGTGTCCACGGCACCCAGGGATCTGCCCACGAATG
TGCTGCTGCATTACACCCAATGCGACCAGCCACACGAATCGTTTACCAAC
GCTGAGGGAATCGCATATTCCCTAAACAATGCTCGCAGTGCCATGGCCAC
GGTTATGAGATATCGCTTGTGCTCTTCAATCCTCGGCTGCAGCCCAGCTG
GGTGCTGTAATGAACTCGAATAACATGAAAGAATGCTGAACCCACCTGTG
AAGGCCCTC
FMO10630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tty-RF | 6642 | CG1693-RF | 395..1457 | 9..1060 | 5020 | 98.8 | Plus |
| tty-RE | 3853 | CG1693-RE | 335..1397 | 9..1060 | 5020 | 98.8 | Plus |
| tty-RD | 7199 | CG1693-RD | 995..2057 | 9..1060 | 5020 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21335995..21336482 | 632..145 | 2440 | 100 | Minus |
| X | 23542271 | X | 21335492..21335931 | 1060..632 | 1660 | 96.6 | Minus |
| X | 23542271 | X | 21336775..21336912 | 146..9 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:39:00 has no hits.
FMO10630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:09 Download gff for
FMO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tty-RA | 329..1400 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:39:42 Download gff for
FMO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tty-RD | 986..2057 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:30 Download gff for
FMO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tty-RD | 986..2057 | 1..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:30 Download gff for
FMO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21335492..21335930 | 633..1060 | 97 | <- | Minus |
| X | 21335995..21336480 | 147..632 | 100 | <- | Minus |
| X | 21336775..21336916 | 1..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:39:42 Download gff for
FMO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21206519..21206957 | 633..1060 | 97 | <- | Minus |
| arm_X | 21207022..21207507 | 147..632 | 100 | <- | Minus |
| arm_X | 21207802..21207943 | 1..146 | 97 | | Minus |
