FMO10633.5prime Sequence
1138 bp (1023 high quality bases) assembled on 2011-06-24
> FMO10633.5prime
CAGTCGACATGGCCATCATAACGAGTGCCTTCTTCTCGTCGATGAGCTTC
GCCGGCCTGTTCTCCGGCTCCCTGTTCCAGCGCTTTGGAATGCGGCAGGT
GGGCGTCACTGGCGGCATCTTGTACTTCCTGGGCACTGGAATGCAGTTGT
TCGCCACCTCCACGCTACACCTGATCATGGCCTTTAGCGTCGTTCAGGGA
TTCGCCTTCGGGCTGATGGTGCCCACCTGCTATACGACATTCAACCATTA
TTTTGTCAAGAACCGCGTGATGTGGATGAGCTTTGCCCAGACACTGATTG
GCTTGGGCTCCATGCTATATCCGATTGTCATGCAGAAGTTGATGTCATGG
TACGGCTTCCGCGGTTGCCTGCTCATCCTCACGGGACTGAATGCTCATGC
GGTGTTCGGGATGCTGGTCATGCACCCAGTGGAGTGGCACATGCGTCGCG
TGCCCATCCAGCCCGAGGAGCAGGAGGAACTCAAGGAGTTGAGCCCAACG
GTGGTGATTAGAGTGCAGCCGGAAACACCGCTTAAGGCTACCAGAGAGGA
GCCCAACTTTCATACCGCTGATCCAGGAGCGCGAAAGCTCTCCCACGCCG
AGGAGCAAATGCTGAAGGTTCTGTCCAGTCGGGCCTCGAGCATCACCAGC
CTGGGCAATTGGTCCGGACCCGTGGTGGTCAGTGACGCCTCGCCCCAGAT
GATGCACAGCCTGCAGACCTCACGGCGTCCGAGCACGATTGCCGGTGCAT
CATGTGCAGTAGCTCCAGCCCACGCTACCAAAAAGAGCTGGGTGCGCACC
ATCGTCGACTTCCTCGATCTCACGCTGCTGAAGAAGGCCATTTTCGTTAA
CATCGTGCTGGGCATCACCTTTGCCCTCTACTCCGACATCACCTTCTTCA
CCATGCAGCCAGTCTACCTATTTGAGCTGGGATACAGCAGCCCGACACGG
CCCCATTATCGCCATGGAGCGGCGCAGACTTTGCCATCTCGTATTTTCCT
GGCCATCACCGCGTGTGCATCCAGGTTCTTCAGAATACATTTATTTGCCG
GGCGTTTTCCAGCGTTTTTGGCAGAATTCGTAGCCACCTTCTTGGGCCTC
AAGAACTCGTTCTCCACTATCTCACTCATTTCCAAGCC
FMO10633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RD | 1947 | CG8028-RD | 443..1487 | 8..1047 | 4965 | 98.9 | Plus |
| CG8028-RC | 1846 | CG8028-RC | 258..1302 | 8..1047 | 4965 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19278975..19279907 | 940..8 | 4635 | 99.8 | Minus |
| X | 23542271 | X | 19277867..19277980 | 1047..938 | 215 | 91.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:39:14 has no hits.
FMO10633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:11 Download gff for
FMO10633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RB | 224..1275 | 1..1047 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:41:11 Download gff for
FMO10633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 251..1322 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:36 Download gff for
FMO10633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 251..1322 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:36 Download gff for
FMO10633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19277867..19277977 | 941..1047 | 92 | <- | Minus |
| X | 19278974..19279912 | 1..940 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:41:11 Download gff for
FMO10633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19171900..19172010 | 941..1047 | 92 | <- | Minus |
| arm_X | 19173007..19173945 | 1..940 | 99 | | Minus |
