FMO10636.5prime Sequence
467 bp (467 high quality bases) assembled on 2011-06-24
> FMO10636.5prime
CACTCGACATGGATCGCAATAATGGACGCTATCCCTACAACATTAGGCGG
CAGAACAGCGGGCACAATGCGCCGCACAGCTACCATCACCACCATAACAA
CAATTCGGCGGCGGGGGCGTCCAATTCGCCGGGATACAATAACCACAGTG
CCGGAAACTCTCCGTCCGTCGGTGGCCATAACAACAGCAATCCGCTCTAC
GCCTCCGCCGCCGGACAGCAGCAGCAACAACAGCAACCACAGAGCCTGCC
AATCTCGCAGCACGATGAGCTCATCCGGTACATCCGGGGGGCATGGATCA
AGGTCTACGAACAGGGTCCACCTGTGCTGTACTGCAACGAATCCGACAAT
CAGCTGAAGAACTTTAAGCCATTCGATTTGGAGGAGTACTGGGGCCAGCG
CCTGGTGCAGAACATCCATGTGACCACCACGCAGGCCGGTGGACACCAGG
CAAGCTTTCTAGACCAT
FMO10636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34159-RA | 936 | CG34159-RA | 128..570 | 7..449 | 2215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10203382..10203661 | 304..25 | 1400 | 100 | Minus |
| 2L | 23513712 | 2L | 10202886..10203034 | 449..301 | 745 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1050..1138 | 153..242 | 131 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2537 | 34..251 | 127 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1594 | 216..252 | 124 | 84.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1121 | 201..270 | 122 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2402 | 175..242 | 120 | 69.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3257..3319 | 175..241 | 119 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2364 | 215..270 | 118 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2659 | 180..241 | 117 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2408..2444 | 215..251 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6823 | 215..242 | 113 | 89.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2483 | 71..242 | 112 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..6907 | 180..242 | 111 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2348 | 198..242 | 110 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2803..2851 | 214..262 | 110 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6829..6884 | 215..270 | 109 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2411 | 216..242 | 108 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2876 | 176..248 | 108 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6391..6571 | 68..251 | 107 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6791 | 215..270 | 107 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6812 | 215..270 | 107 | 69.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1135..1162 | 215..242 | 104 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1541 | 206..242 | 104 | 75.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5654..5690 | 215..251 | 104 | 75.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6802 | 215..242 | 104 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6866..6923 | 179..234 | 104 | 71.2 | Plus |
FMO10636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:06 Download gff for
FMO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34159-RA | 122..580 | 1..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:37:42 Download gff for
FMO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34159-RA | 119..577 | 1..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:24 Download gff for
FMO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34159-RA | 119..577 | 1..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:24 Download gff for
FMO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10203384..10203660 | 26..302 | 100 | <- | Minus |
| 2L | 10202879..10203032 | 303..455 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:37:42 Download gff for
FMO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10202879..10203032 | 303..455 | 98 | <- | Minus |
| arm_2L | 10203384..10203660 | 26..302 | 100 | <- | Minus |
