FMO10639.5prime Sequence
920 bp (920 high quality bases) assembled on 2011-06-24
> FMO10639.5prime
CAGTCGACATGGCACAGAGCAAATTGAACGATCTTGCCGGCAAGCTGGGC
AAAGGTGGTCCGCCGGGATTGGGAATCGGACTGAAGGTCCTGGCCGCCGT
GGGAGCAGCCGCCTATGGAGTCAGTCAGTCCCTGTACACCGTTGAGGGTG
GTCACCGCGCCATCATCTTCAGCCGTCTGGGCGGCATCCAGAGCGACATT
TACTCCGAGGGACTGCACGTGCGCATCCCCTGGTTCCAGTATCCCATTAT
CTATGACATTCGCTCGCGTCCCCGCAAAATATCCTCGCCCACTGGCTCCA
AGGATCTGCAGATGATCAACATCTCGCTGCGTGTGCTGTCGCGCCCCGAT
TCCCTGAACCTGCCCTATCTGCACAAGCAGCTGGGCGTGGACTACGACGA
GAAGGTGCTGCCCTCCATTTGCAACGAGGTGCTGAAGAGCGTGATTGCCA
AGTTCAATGCCTCGCAGCTTATTACCCAGCGTCAGCAGGTATCCCTACTC
ATCCGCAAGGAGCTGGTCGAGCGCGCCCGCGACTTCAACATCATTCTGGA
CGATGTGTCCCTCACCGAGCTGAGCTTCGGCAAGGAATACACGGCGGCCA
TTGAGGCCAAACAAGTGGCTCAGCAGGAGGCACAGCGGGCTGTCTTCTTT
GTGGAGCGCGCCAAGCAGGAGAAGCAGCAGAAGATTGTTCAGGCTGAGGG
AGAAGCCGAGGCTGCTAAAATGTTAGGTCTGGCCGTGAAGCAGACCCAGC
CTACCTGAAGCTGCGCAAGCTGCGTGCCGCTCAAAGCATTGCACGCACGA
TTGCCAGCTCACAGAACAAGGTCTATTTGTCGGCGGATAGCTTGATGCTT
AACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGTTTACAAAGTA
AAGCAAGCTTTCTAGACCAT
FMO10639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phb2-RF | 1614 | CG15081-RF | 167..1063 | 9..902 | 4410 | 99.7 | Plus |
Phb2-RA | 1554 | CG15081-RA | 167..1063 | 9..902 | 4410 | 99.7 | Plus |
Phb2-RB | 1518 | CG15081-RB | 71..967 | 9..902 | 4410 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18820195..18820545 | 141..491 | 1755 | 100 | Plus |
2R | 25286936 | 2R | 18820603..18820838 | 487..722 | 1180 | 100 | Plus |
2R | 25286936 | 2R | 18819633..18819765 | 9..141 | 665 | 100 | Plus |
2R | 25286936 | 2R | 18821183..18821273 | 799..889 | 455 | 100 | Plus |
2R | 25286936 | 2R | 18821041..18821118 | 723..799 | 340 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:39:47 has no hits.
FMO10639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:15 Download gff for
FMO10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)03709-RA | 130..1039 | 1..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:44:10 Download gff for
FMO10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)03709-RB | 63..972 | 1..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:48 Download gff for
FMO10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phb2-RB | 63..972 | 1..909 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:48 Download gff for
FMO10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18821045..18821118 | 727..799 | 98 | -> | Plus |
2R | 18821184..18821293 | 800..909 | 95 | | Plus |
2R | 18819625..18819765 | 1..141 | 97 | -> | Plus |
2R | 18820196..18820542 | 142..488 | 100 | -> | Plus |
2R | 18820605..18820843 | 489..726 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:44:10 Download gff for
FMO10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14708550..14708623 | 727..799 | 98 | -> | Plus |
arm_2R | 14708689..14708798 | 800..909 | 95 | | Plus |
arm_2R | 14707130..14707270 | 1..141 | 97 | -> | Plus |
arm_2R | 14707701..14708047 | 142..488 | 100 | -> | Plus |
arm_2R | 14708110..14708348 | 489..726 | 98 | -> | Plus |