FMO10642.5prime Sequence
341 bp (341 high quality bases) assembled on 2011-06-24
> FMO10642.5prime
CAGTCGACATGAAATTCCTGATTGTCTTCGTCGCCCTCTTCGCCGTGGCT
CTGGCTGCTCCTGCCGCTGAGGAACCCACAATCGTGCGCTCTGAATCCGA
CGTTGGACCCGAAAGCTTCAAATACGACTGGGAAACCTCCGATGGACAGG
CTGCTCAAGCTGTAGGTCAGCTGAACGACATTGGAACTGAGAACGAGGCT
ATCTCTGTGAGTGGATCCTACCGCTTCATTGCTGATGATGGCCAGACCTA
CCAAGTCAACTACATCGCCGATAAGAACGGATTCCAGCCCCAGGGTGCTC
ATCTGCCCGTTGCCCCCGTGGCAGCAAGCTTTCTAGACCAT
FMO10642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ag1-RA | 517 | CG10530-RA | 61..376 | 8..323 | 1580 | 100 | Plus |
Lcp65Ag2-RA | 543 | CG10534-RA | 61..375 | 8..322 | 1575 | 100 | Plus |
Lcp65Ag3-RA | 543 | CG18779-RA | 60..375 | 8..323 | 1565 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6134838..6135033 | 323..128 | 980 | 100 | Minus |
3L | 28110227 | 3L | 6133158..6133352 | 322..128 | 975 | 100 | Minus |
3L | 28110227 | 3L | 6130554..6130749 | 323..128 | 965 | 99.5 | Minus |
3L | 28110227 | 3L | 6130811..6130930 | 127..8 | 600 | 100 | Minus |
3L | 28110227 | 3L | 6133414..6133533 | 127..8 | 600 | 100 | Minus |
3L | 28110227 | 3L | 6135095..6135214 | 127..8 | 600 | 100 | Minus |
3L | 28110227 | 3L | 6137725..6137826 | 314..213 | 405 | 93.1 | Minus |
3L | 28110227 | 3L | 6147570..6147653 | 319..236 | 315 | 91.7 | Minus |
3L | 28110227 | 3L | 6150441..6150524 | 319..236 | 315 | 91.7 | Minus |
3L | 28110227 | 3L | 6145194..6145289 | 213..308 | 285 | 86.5 | Plus |
3L | 28110227 | 3L | 6136385..6136555 | 321..151 | 270 | 77.2 | Minus |
3L | 28110227 | 3L | 6136699..6136742 | 50..7 | 190 | 95.5 | Minus |
3L | 28110227 | 3L | 6139425..6139496 | 308..237 | 180 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:39:56 has no hits.
FMO10642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:16 Download gff for
FMO10642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ag1-RA | 50..379 | 1..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:45:09 Download gff for
FMO10642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ag1-RA | 54..383 | 1..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:51 Download gff for
FMO10642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ag1-RA | 54..383 | 1..332 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:51 Download gff for
FMO10642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6134830..6135033 | 128..332 | 98 | <- | Minus |
3L | 6135095..6135221 | 1..127 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:45:09 Download gff for
FMO10642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6127930..6128133 | 128..332 | 98 | <- | Minus |
arm_3L | 6128195..6128321 | 1..127 | 97 | | Minus |