Clone FMO10642 Report

Search the DGRC for FMO10642

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptLcp65Ag1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10642.5prime Sequence

341 bp (341 high quality bases) assembled on 2011-06-24

> FMO10642.5prime
CAGTCGACATGAAATTCCTGATTGTCTTCGTCGCCCTCTTCGCCGTGGCT
CTGGCTGCTCCTGCCGCTGAGGAACCCACAATCGTGCGCTCTGAATCCGA
CGTTGGACCCGAAAGCTTCAAATACGACTGGGAAACCTCCGATGGACAGG
CTGCTCAAGCTGTAGGTCAGCTGAACGACATTGGAACTGAGAACGAGGCT
ATCTCTGTGAGTGGATCCTACCGCTTCATTGCTGATGATGGCCAGACCTA
CCAAGTCAACTACATCGCCGATAAGAACGGATTCCAGCCCCAGGGTGCTC
ATCTGCCCGTTGCCCCCGTGGCAGCAAGCTTTCTAGACCAT

FMO10642.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag1-RA 517 CG10530-RA 61..376 8..323 1580 100 Plus
Lcp65Ag2-RA 543 CG10534-RA 61..375 8..322 1575 100 Plus
Lcp65Ag3-RA 543 CG18779-RA 60..375 8..323 1565 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6134838..6135033 323..128 980 100 Minus
3L 28110227 3L 6133158..6133352 322..128 975 100 Minus
3L 28110227 3L 6130554..6130749 323..128 965 99.5 Minus
3L 28110227 3L 6130811..6130930 127..8 600 100 Minus
3L 28110227 3L 6133414..6133533 127..8 600 100 Minus
3L 28110227 3L 6135095..6135214 127..8 600 100 Minus
3L 28110227 3L 6137725..6137826 314..213 405 93.1 Minus
3L 28110227 3L 6147570..6147653 319..236 315 91.7 Minus
3L 28110227 3L 6150441..6150524 319..236 315 91.7 Minus
3L 28110227 3L 6145194..6145289 213..308 285 86.5 Plus
3L 28110227 3L 6136385..6136555 321..151 270 77.2 Minus
3L 28110227 3L 6136699..6136742 50..7 190 95.5 Minus
3L 28110227 3L 6139425..6139496 308..237 180 83.3 Minus
Blast to na_te.dros performed on 2014-11-26 23:39:56 has no hits.

FMO10642.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:16 Download gff for FMO10642.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 50..379 1..332 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:45:09 Download gff for FMO10642.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 54..383 1..332 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:51 Download gff for FMO10642.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag1-RA 54..383 1..332 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:51 Download gff for FMO10642.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6134830..6135033 128..332 98 <- Minus
3L 6135095..6135221 1..127 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:45:09 Download gff for FMO10642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6127930..6128133 128..332 98 <- Minus
arm_3L 6128195..6128321 1..127 97   Minus