Clone FMO10644 Report

Search the DGRC for FMO10644

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:44
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTis11-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10644.5prime Sequence

1154 bp (1023 high quality bases) assembled on 2011-06-24

> FMO10644.5prime
CAGTCGACATGTCTGCTGATATTCTGCAGAAATCAAGAGAGCAGGATGAT
TCGCACTACTTCGAGCGTGGCGATATATCCAAATACGTAACGATGAACGA
TCACTTGGGTGATTTCGATTGCAACGAGGTGCGCAAGGAAATAAGGATGC
TGCTCGCCCACGGCGCCAACTTGGATCAGCAGCACCAGCAGCAGCCACAT
CGCCACCATGGCGGTCTCACACGAACCATTTCACAGCCGGCCCAGCTCAC
CCAGCAGCAGCAGCAGCAACACCAACAGCAGCAGCAGCAGCAGCCAGCTG
TTGCCAGTCTGGTGACCATCACCGAGAACCTGGGCAACATGAACCTGCAC
CGAAAGCTGGAGCGAACCCAATCGGAGCCACTGCCGCCACAGCAGCCGAT
GAACACATCCAGATACAAGACCGAGCTGTGCCGCCCGTTCGAGGAGGCCG
GAGAATGCAAGTACGGCGAGAAGTGCCAGTTCGCCCATGGAAGCCATGAG
TTGCGAAACGTGCACCGTCATCCCAAGTACAAGACGGAATACTGCCGCAC
CTTCCACAGCGTGGGCTTCTGTCCCTACGGACCGCGCTGTCACTTTGTTC
ACAATGCGGACGAGGCCCGCGCCCAACAGGCGGCCCAGGCAGCCAAGTCC
TCCACCCAGTCGCAGTCGCAGTCGCAGCAGTCGTCGTCGCAGAACTTCTC
GCCGAAAGAGCAACCAGAGCAGCAATCAAAGTAGCAACAGTAGCAGCAGC
AGCAGCAGCAGCGGCGGCGGCGGTGGCGGCGGCAACAGCATCAACAACAA
CAACGGTAGCCAATTCTATCTGCCGCTAAGCCCACCGCTGAGCATGAGCA
CAGGATCGGACCGGGAATCGCCCACCGGATCACTGTCCCTCAGCCCCACC
AACTCGTTGACCAGCTTCCCGTTCCACGATGCCCTGCAGCATGGATATTT
GGCATCGAATGCCGCCAAGAGCAACAGTTCCGCCTCGTCCACATCATCGG
CCTCTGAAATGGGTCTGGGCATGAGCATGGTATCGGGCCAAGGCATGATC
ATCGTCAGGCTTGGGAATGGGACATCATGACGGCCTAACCCGCCAGGAGA
GCCCAATGGTGCCATATCGCAGTGCTACACCGCCACCGTTACGATGTGGT
GTTC

FMO10644.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tis11-RD 2023 CG4070-RD 251..1396 9..1151 5295 98.1 Plus
Tis11-RC 5009 CG4070-RC 385..1530 9..1151 5295 98.1 Plus
Tis11-RA 2157 CG4070-RA 385..1530 9..1151 5295 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12678321..12679001 400..1079 3110 98.1 Plus
X 23542271 X 12677736..12678056 92..412 1590 99.7 Plus
X 23542271 X 12660784..12660867 9..92 420 100 Plus
Blast to na_te.dros performed 2014-11-26 23:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2959 173..858 288 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2430 701..804 223 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2408 710..812 219 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2486 675..812 212 62.4 Plus
roo 9092 roo DM_ROO 9092bp 1059..1145 718..804 210 71.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2761..2834 739..812 172 70.3 Plus
roo 9092 roo DM_ROO 9092bp 1059..1163 178..285 154 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2835..2996 657..813 151 57.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3233..3371 710..852 146 60.7 Plus

FMO10644.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:17 Download gff for FMO10644.5prime
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 431..1586 1..1154 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:46:09 Download gff for FMO10644.5prime
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 378..1533 1..1154 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:56 Download gff for FMO10644.5prime
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 378..1533 1..1154 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:56 Download gff for FMO10644.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12660777..12660867 1..92 95 -> Plus
X 12677737..12678056 93..412 99 -> Plus
X 12678334..12679078 413..1154 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:46:09 Download gff for FMO10644.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12554810..12554900 1..92 95 -> Plus
arm_X 12571770..12572089 93..412 99 -> Plus
arm_X 12572367..12573111 413..1154 97   Plus