FMO10644.5prime Sequence
1154 bp (1023 high quality bases) assembled on 2011-06-24
> FMO10644.5prime
CAGTCGACATGTCTGCTGATATTCTGCAGAAATCAAGAGAGCAGGATGAT
TCGCACTACTTCGAGCGTGGCGATATATCCAAATACGTAACGATGAACGA
TCACTTGGGTGATTTCGATTGCAACGAGGTGCGCAAGGAAATAAGGATGC
TGCTCGCCCACGGCGCCAACTTGGATCAGCAGCACCAGCAGCAGCCACAT
CGCCACCATGGCGGTCTCACACGAACCATTTCACAGCCGGCCCAGCTCAC
CCAGCAGCAGCAGCAGCAACACCAACAGCAGCAGCAGCAGCAGCCAGCTG
TTGCCAGTCTGGTGACCATCACCGAGAACCTGGGCAACATGAACCTGCAC
CGAAAGCTGGAGCGAACCCAATCGGAGCCACTGCCGCCACAGCAGCCGAT
GAACACATCCAGATACAAGACCGAGCTGTGCCGCCCGTTCGAGGAGGCCG
GAGAATGCAAGTACGGCGAGAAGTGCCAGTTCGCCCATGGAAGCCATGAG
TTGCGAAACGTGCACCGTCATCCCAAGTACAAGACGGAATACTGCCGCAC
CTTCCACAGCGTGGGCTTCTGTCCCTACGGACCGCGCTGTCACTTTGTTC
ACAATGCGGACGAGGCCCGCGCCCAACAGGCGGCCCAGGCAGCCAAGTCC
TCCACCCAGTCGCAGTCGCAGTCGCAGCAGTCGTCGTCGCAGAACTTCTC
GCCGAAAGAGCAACCAGAGCAGCAATCAAAGTAGCAACAGTAGCAGCAGC
AGCAGCAGCAGCGGCGGCGGCGGTGGCGGCGGCAACAGCATCAACAACAA
CAACGGTAGCCAATTCTATCTGCCGCTAAGCCCACCGCTGAGCATGAGCA
CAGGATCGGACCGGGAATCGCCCACCGGATCACTGTCCCTCAGCCCCACC
AACTCGTTGACCAGCTTCCCGTTCCACGATGCCCTGCAGCATGGATATTT
GGCATCGAATGCCGCCAAGAGCAACAGTTCCGCCTCGTCCACATCATCGG
CCTCTGAAATGGGTCTGGGCATGAGCATGGTATCGGGCCAAGGCATGATC
ATCGTCAGGCTTGGGAATGGGACATCATGACGGCCTAACCCGCCAGGAGA
GCCCAATGGTGCCATATCGCAGTGCTACACCGCCACCGTTACGATGTGGT
GTTC
FMO10644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tis11-RD | 2023 | CG4070-RD | 251..1396 | 9..1151 | 5295 | 98.1 | Plus |
Tis11-RC | 5009 | CG4070-RC | 385..1530 | 9..1151 | 5295 | 98.1 | Plus |
Tis11-RA | 2157 | CG4070-RA | 385..1530 | 9..1151 | 5295 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12678321..12679001 | 400..1079 | 3110 | 98.1 | Plus |
X | 23542271 | X | 12677736..12678056 | 92..412 | 1590 | 99.7 | Plus |
X | 23542271 | X | 12660784..12660867 | 9..92 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2959 | 173..858 | 288 | 54.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2430 | 701..804 | 223 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2408 | 710..812 | 219 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2486 | 675..812 | 212 | 62.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 718..804 | 210 | 71.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2834 | 739..812 | 172 | 70.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1163 | 178..285 | 154 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2835..2996 | 657..813 | 151 | 57.1 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3233..3371 | 710..852 | 146 | 60.7 | Plus |
FMO10644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:17 Download gff for
FMO10644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tis11-RA | 431..1586 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:46:09 Download gff for
FMO10644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tis11-RA | 378..1533 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:56 Download gff for
FMO10644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tis11-RA | 378..1533 | 1..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:56 Download gff for
FMO10644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12660777..12660867 | 1..92 | 95 | -> | Plus |
X | 12677737..12678056 | 93..412 | 99 | -> | Plus |
X | 12678334..12679078 | 413..1154 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:46:09 Download gff for
FMO10644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12554810..12554900 | 1..92 | 95 | -> | Plus |
arm_X | 12571770..12572089 | 93..412 | 99 | -> | Plus |
arm_X | 12572367..12573111 | 413..1154 | 97 | | Plus |