FMO10646.5prime Sequence
1127 bp (1014 high quality bases) assembled on 2011-06-24
> FMO10646.5prime
CAGTCGACATGAATACATTGAGCAGTGCGCGATCTGTGGCGATTTACGTG
GGTCCCGTTCGATCTTCAAGATCAGCCTCCGTTTTGGCACATGAACAAGC
TAAATCTAGTATAACGGAGGAGCACAAGACCTACGATGAGATTCCGCGGC
CCAACAAATTCAAATTTATGAGGGCTTTCATGCCCGGTGGTGAATTCCAA
AATGCATCGATTACGGAATACACCAGTGCCATGCGAAAGCGCTATGGAGA
TATCTATGTAATGCCCGGAATGTTTGGCCGCAAGGATTGGGTCACCACTT
TCAACACAAAGGACATTGAGATGGTATTCCGCAACGAGGGTGTCTGGCCA
CGTCGTGATGGCCTGGATTCCATTGTATATTTCCGCGAACACGTTCGACC
AGATGTTTACGGTGAGGTTCAAGGATTGGTGGCTTCACAAAATGAGGCAT
GGGGAAAACTACGATCAGCCATTAATCCCATCTTTATGCAACCCAGGGGC
TTGAGAATGTATTATGAACCATTGTCTAATATCAATAATGAGTTTATAGA
GCGCATTAAGGAAATCCGCGATCCAAAAACTCTAGAAGTCCCCGAAGATT
TTACGGATGAAATAAGCCGGCTTGTTTTCGAGTCACTCGGCCTGGTGGCT
TTCGATCGGCAAATGGGTCTGATTAGAAAAAACCGCGATAATTCCGATGC
ATTGACCCTCTTCCAGACCTCGAGGGATATTTTCCGTCTCACATTTAAGC
TAGACATTCAGCCCTCCATGTGGAAGATCATATCGACGCCCACCTACAGG
AAAATGAAGCGAACTCTCAATGACAGTTTGAATGTGTCCCAGAAAATGCT
GAAGGAAATCAGATGCACTGGAAAAGCGCCGCCAGGCTGGCGAAAAAATA
AATAGTACAGTATGCTGGAGAGATAATGGAGATCGATCCCAGGTGGCGGT
GATTATGAGTCTGGACATCCTATTCGCTGGTGTGATGCTCACAGCCACGC
TTCTGTCGCTGTTTACTCTTCCTCTCTGGCATCCGGATAGCAGCACTGCG
GAGGAGCTCTGACATCATGCCACAAGATTCCTACTCAACGAGAAAACCTG
AAGATATGCTATTTTGAGGCTGTGATC
FMO10646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12d1-d-RA | 1812 | CG33503-RA | 34..1176 | 9..1127 | 4995 | 97.1 | Plus |
| Cyp12d1-p-RB | 4482 | CG30489-RB | 37..1179 | 9..1127 | 4980 | 97 | Plus |
| Cyp12d1-p-RA | 1741 | CG30489-RA | 37..1179 | 9..1127 | 4980 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11124432..11124892 | 1008..553 | 1980 | 97.8 | Minus |
| 2R | 25286936 | 2R | 11120666..11121126 | 1008..553 | 1965 | 97.6 | Minus |
| 2R | 25286936 | 2R | 11121361..11121686 | 436..111 | 1615 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11125127..11125452 | 436..111 | 1615 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11121190..11121306 | 553..437 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 11124956..11125072 | 553..437 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 11121747..11121848 | 110..9 | 510 | 100 | Minus |
| 2R | 25286936 | 2R | 11125513..11125614 | 110..9 | 510 | 100 | Minus |
| 2R | 25286936 | 2R | 11123006..11123103 | 340..243 | 205 | 80.6 | Minus |
| 2R | 25286936 | 2R | 11126772..11126869 | 340..243 | 205 | 80.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:39:19 has no hits.
FMO10646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:12 Download gff for
FMO10646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12d1-d-RA | 1..1005 | 9..1008 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:41:42 Download gff for
FMO10646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12d1-d-RA | 27..1038 | 1..1008 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:39 Download gff for
FMO10646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12d1-d-RA | 27..1038 | 1..1008 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:39 Download gff for
FMO10646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11124432..11124891 | 554..1008 | 98 | <- | Minus |
| 2R | 11124956..11125072 | 437..553 | 100 | <- | Minus |
| 2R | 11125127..11125452 | 111..436 | 99 | <- | Minus |
| 2R | 11125513..11125619 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:41:42 Download gff for
FMO10646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7011937..7012396 | 554..1008 | 98 | <- | Minus |
| arm_2R | 7012461..7012577 | 437..553 | 100 | <- | Minus |
| arm_2R | 7012632..7012957 | 111..436 | 99 | <- | Minus |
| arm_2R | 7013018..7013124 | 1..110 | 96 | | Minus |
