FMO10647.5prime Sequence
1087 bp (962 high quality bases) assembled on 2011-06-24
> FMO10647.5prime
CAGTCGACATGTGTTCCAAAGCATTGCTGCTCCTGGCCGTCATTCTAGCT
GCTCGCTGTTTTGGTAGTGGCTCTTCCAGACGAACGCTCGCCATGGCCTG
CGAGGAGACGATGGAATCGACGCCGGGGCTCAAAAACAATAGATATGGCT
ATAGAAGCGCCACGGACAACAACTACAACGATTACAACTACAAGTGGGAG
CACGGGGATGTGGACGTTGATGGCATTGCAGATAGCAACGAGGACGACAA
CAATGACAACTATAACTACAACAAAGCACCGGCCAAATGGCAGCAGCAAC
AGCAGCAAAAACTCTACGGAAATCCCATCCACAGCATATACGACAGGCAG
CAACATCTACAACGGCAGCAGCAGCAGCAACATGAGCAGCAGCAACAACA
GCAACATCAACAGCGGCAACTCGAACAGCAGCAACAGGGATTGGGAATGG
AAATGGGACTGGGACAGTTTGATGATGATCCAGAGAATGCTCGCAACGAC
TTCCGTCTGCAATTGTCCGACTTAAATGCGGCCGTTCAAGGTATGGGCAG
GTTTGCTGTTACCCAGGACCAGAACAAAGACCAGGACAACAGCAATAGTA
ATAGCAACAGCAATGGCAACAGCAACAGCATCATCAAGGACAACAGCAAC
ATCGACTGGCTGCAGCCGATGGAGGAGCATGAGCAATTGTTGCTGGAGCG
TCGCAGCCGCAGCAGCAACATCAACCAAAGGTCAGCCATGGATGAGCAGC
GGAGCAGGGAACCAGGTCAGCCCGAGTACACCAACAATGAGTTACCATCT
GGCGGTCTAGATGATGTGGACATTGAGGGCGAGGAGGATTACGCATGTCA
AGAGGAGACGCAGACGACTGAGTTCACAGATGCCCTACGGATACAGAACG
TGCGCAAGCGCGCGTTCGCAGTGTAATGCCACCGGTACCATTCTGGGCCC
CAATCCCAGCTCAGATGGGGTAGTCACTATCAGTCGTGTGCCCCACAAAT
CGGTGACCGTGAGTGAAAGCGGCGATACGTCCCATCACTATGTGAGTATG
TGCCACAACTACTCAACGCAGCTCAGATCTTAACTTG
FMO10647.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34386-RD | 2180 | CG34386-RD | 507..1594 | 8..1072 | 4835 | 97.5 | Plus |
| CG34386-RC | 1891 | CG34386-RC | 218..1305 | 8..1072 | 4835 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18089961..18090667 | 26..732 | 3505 | 99.7 | Plus |
| 2R | 25286936 | 2R | 18092550..18092801 | 729..972 | 845 | 96.4 | Plus |
| 3R | 32079331 | 3R | 27737534..27737576 | 588..630 | 185 | 95.3 | Plus |
Blast to na_te.dros performed 2014-11-26 23:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6918 | 230..436 | 376 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6883 | 270..437 | 365 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2501 | 231..437 | 363 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6901 | 248..434 | 354 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2690 | 286..661 | 347 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6943 | 234..437 | 325 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2524 | 234..436 | 324 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2550 | 234..434 | 306 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2434 | 282..436 | 284 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2411 | 326..437 | 282 | 76.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2446 | 289..436 | 275 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6878 | 574..736 | 270 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2897 | 234..730 | 269 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2933 | 275..437 | 249 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6902 | 564..728 | 244 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2512 | 563..756 | 242 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6456..6898 | 286..730 | 233 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2494 | 590..786 | 229 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6952 | 232..416 | 228 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6944 | 564..747 | 226 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2502 | 564..725 | 223 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2752..2946 | 244..438 | 209 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..3032 | 234..686 | 204 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6848 | 594..725 | 204 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..7011 | 564..729 | 203 | 63.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1164 | 564..657 | 199 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2451 | 576..725 | 182 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..7037 | 153..438 | 177 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6896 | 564..653 | 175 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6939 | 564..685 | 169 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1494..1581 | 558..653 | 164 | 68.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2011..2112 | 586..688 | 153 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1509..1589 | 561..637 | 144 | 66.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3346 | 593..660 | 142 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1130 | 580..653 | 140 | 67.6 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1224..1294 | 559..625 | 130 | 67.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 518..568 | 586..636 | 129 | 72.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3285..3351 | 587..653 | 128 | 65.7 | Plus |
FMO10647.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:12 Download gff for
FMO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34386-RC | 212..1305 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:42:11 Download gff for
FMO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34386-RC | 212..1305 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:41 Download gff for
FMO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34386-RC | 212..1305 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:41 Download gff for
FMO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18089962..18090665 | 27..730 | 99 | -> | Plus |
| 2R | 18092552..18092798 | 731..969 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:42:11 Download gff for
FMO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13977467..13978170 | 27..730 | 99 | -> | Plus |
| arm_2R | 13980057..13980303 | 731..969 | 96 | -> | Plus |
