FMO10648.5prime Sequence
1131 bp (950 high quality bases) assembled on 2011-06-24
> FMO10648.5prime
CAGTCGACATGAACACCAGCCAGACAGCTGCCGGCAATCGCATCACCTTC
ACCAGCCAGCCGCTGCCCAATGGCACCATCAGCATAGCCGGCAATCCCGG
CGCGGTCATCTCCACGGCCCAGCTACCGAATACCACCACCATCAAGACGA
TCCAGGCGGGGATCGGTGGTCAGCATCAGGGACTTCAGCAGGTGCATCAT
GTCCAACAGCAGCAGCAGTCGCAACAGCAACAACAGCAGCAACAGCAGAC
GCAATCCGCCGGTCAACCGCTGCTCAATTCAATGCTGCCGGCTGGCGTGG
TGGTGGGCATGCGCCAACAGGCGCCGTCACAGCAGCAGCAGAAGAATGTG
CCCACCAACCCGCTCAGTCGCGTGGTGATCAACTCCCACATGGCGGGCGT
GAGACCGCAGAGTCCATCGTCTATGACCAACACGACCGCCACCAGCAACA
TCATTGTCAATTCGGTGGCAAGCAGTGGATATGCAAACTCTTCGCAGCCG
CCGCATCTGACGCAACTAAATGCGCAGGCGCCACAACTGCCGCAGATTAC
GCAGATTCAAACAATACCGGCCCAGCAGTCTCAGCAGCAGCAGGTGAACA
ATGTAAGCTCCGCGGGAGGAACGGCAACGGCGGTCAGCAGTACGACGGCA
GCGACGACGACGCAGCAGGGCAATACCAAAGAAAAGTGTCGCAAGTTTCT
AGCCAATTTAATCGAATTGTCGACACGGGAAACCGGAAGCCGGTGGAGAA
GAACGTGCGCACCCTCATCCAGGAGCTGGTCAATGCGAATGTCGAGCCTG
AGGAGTTTTGTGACCGCCTGGAGCGCTTGCTCAACGCCAGCCCCGCAGCC
GTGTTTGATTGGATTCCTTTAAGAAGAGTTTGCCTCTGCTACGACAACCC
TCTACACAAAGGAGCTGGTCATCGAAAGGCATTAAACCCTCCGCCGCAGC
ACGTTCTCGGCCTGGCGGGACTCTCTCAACGTTGCCTAAATCCAAGCGCA
AAATCCGTTCGATCGGTCCTAGCCAAACATGACAATGGACAGACGCAGGT
GCGTATGATAATCGCCGAATGCCTTGGGGCACGCCCCGAACCACCATTGG
CACACCCCACGATATTGAAGCAGCACCGAAA
FMO10648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf4-RD | 4166 | CG5444-RD | 315..1432 | 9..1130 | 5075 | 97.6 | Plus |
| Taf4-RC | 4423 | CG5444-RC | 572..1689 | 9..1130 | 5075 | 97.6 | Plus |
| Taf4-RI | 4226 | CG5444-RI | 786..1492 | 420..1130 | 3020 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16117544..16118100 | 419..980 | 2440 | 98 | Plus |
| 3L | 28110227 | 3L | 16114472..16114721 | 9..258 | 1250 | 100 | Plus |
| 3L | 28110227 | 3L | 16115669..16115830 | 258..419 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 16118173..16118307 | 988..1124 | 280 | 88.5 | Plus |
Blast to na_te.dros performed 2014-11-26 23:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7674..7721 | 308..354 | 129 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2519 | 495..685 | 125 | 55.8 | Plus |
FMO10648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:13 Download gff for
FMO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf4-RD | 297..1419 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:42:40 Download gff for
FMO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf4-RC | 565..1687 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:42 Download gff for
FMO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf4-RC | 565..1687 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:42 Download gff for
FMO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16114465..16114720 | 1..257 | 98 | -> | Plus |
| 3L | 16115669..16115830 | 258..419 | 100 | -> | Plus |
| 3L | 16117545..16118108 | 420..987 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:42:40 Download gff for
FMO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16107565..16107820 | 1..257 | 98 | -> | Plus |
| arm_3L | 16108769..16108930 | 258..419 | 100 | -> | Plus |
| arm_3L | 16110645..16111208 | 420..987 | 98 | -> | Plus |
