Clone FMO10651 Report

Search the DGRC for FMO10651

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:51
Vector:pMK33-CFH-BD
Associated Gene/Transcriptrun-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10651.5prime Sequence

1104 bp (980 high quality bases) assembled on 2011-06-24

> FMO10651.5prime
CAGTCGACATGCATCTGCCAGCGGGTCCAACGATGGTGGCCAACAACACA
CAGGTCCTGGCCGCTGCCGCCGCCGCAGCAGCCGCCGCAGCGGCCGCGGT
AGCCCAGGGTCCTGGGCCGCAGCAGAGTAGCAATGCCACCACCGCCTCCG
CAATCGCCATCAATCCCGCCCAGAGTCTGGCCAACACGAGCACCCACTCG
GCCAGCAGCACGGGCAGCTCCACACCAGATCTCAGCACGAACAACACCAG
CTCGAGCAGCAACGCCACCACCAGTCCGCAGAACTCCGCCAAGATGCCCA
GCTCGATGACCGACATGTTCGCCAGCCTGCACGAGATGCTGCAGGAGTAT
CACGGCGAGCTGGCCCAGACCGGATCGCCCTCGATCCTCTGCAGCGCCCT
GCCCAATCACTGGCGGTCGAACAAGTCGCTGCCCGGAGCCTTCAAGGTGA
TCGCCCTGGACGACGTGCCCGATGGCACCCTGGTGTCCATCAAGTGCGGC
AACGACGAAAACTACTGCGGCGAGCTGAGGAACTGCACCACGACCATGAA
GAACCAGGTGGCCAAGTTCAACGATCTGCGCTTCGTGGGACGATCGGGAC
GCGGCAAGTCCTTCACGCTGACCATCACCATTGCCACCTATCCGGTGCAG
ATCGCCAGCTACAGCAAAGCCATCAAGGTGACCGTCGACGGGCCACGGGA
GCCAAGAAGTAAGCAAAGCTATGGCTATCCCCATCCCGGCGCGTTTAACC
CGTTCATGCTGAATCCCGCTTTGCTGGATGCGGCGTACATGACCTACGGC
TATGCGGACTACTTCCGCCACCAGGCAGCCGCCCAGGCGGCCAAGTGCAT
CATCCGGCACTGGCCAAGTCCTCGGCTTCTCGGTGTCGCCAAATCCCAAT
CATCGGTGGCCACAGCTCTCGTCGGCGGTTCAGCCATCTGAGTATCCCAT
CCGGCGCAGCATGGCAGCGCGGCGGACAACGCCGCATGATGCATCGCCAC
GGGAGCGGCGCCTGCACGCCCTATGCATCGCAGTTCCATTCAACATTGTG
CCGCGAGCCGCGCAGCAGCAGCTACAGGCCTCATCGGTTACTTGCCGGGT
ACTT

FMO10651.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
run-RC 3145 CG1849-RC 922..1981 5..1044 4760 97.7 Plus
run-RA 2474 CG1849-RA 251..1310 5..1044 4760 97.7 Plus
run-RB 2171 CG1849-RB 251..1301 5..1044 4615 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20694689..20695402 5..718 3555 99.9 Plus
X 23542271 X 20695811..20696046 718..948 900 97 Plus
X 23542271 X 9288353..9288560 385..592 290 76 Plus
X 23542271 X 20541938..20542030 497..589 210 81.7 Plus
X 23542271 X 20604130..20604203 571..498 190 83.8 Minus
Blast to na_te.dros performed on 2014-11-26 23:40:20 has no hits.

FMO10651.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:19 Download gff for FMO10651.5prime
Subject Subject Range Query Range Percent Splice Strand
run-RA 243..1314 1..1050 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:47:39 Download gff for FMO10651.5prime
Subject Subject Range Query Range Percent Splice Strand
run-RA 243..1314 1..1050 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:03 Download gff for FMO10651.5prime
Subject Subject Range Query Range Percent Splice Strand
run-RA 245..1316 1..1050 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:03 Download gff for FMO10651.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20694683..20695401 1..717 99 -> Plus
X 20695811..20696123 718..1015 94 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:47:39 Download gff for FMO10651.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20565710..20566428 1..717 99 -> Plus
arm_X 20566838..20567150 718..1015 94 == Plus