FMO10654.5prime Sequence
1123 bp (1001 high quality bases) assembled on 2011-06-24
> FMO10654.5prime
CAGTCGACATGTTCCGGAGTCGCAGCTGGTTTGGCGGACCCTGGGGTGGG
CGGCCCAAAAACCGCTTGTCGCTGGAGCACCTTAAGTACCTGTACAGCAT
TCTGGAGAAGAACACCACCGTGTCGGAAAGTAATCGTGGCCTGCTGGTGG
AGTCGCTGCGCTGCATCGCAGAGATCCTGATTTGGGGCGACCAGCATGAC
TCGCTGGTGTTTGACTTCTTCTTGGAGAAGAATATGCTATCGTATTTCCT
GCACATAATGCGACAAAAGAGTGGAGGCTCGAGTTTCGTCTGCGTGCAGC
TCCTTCAGACTCTCAACATCCTCTTTGAGAACATACGCAACGAGACGTCC
CTGTATTATCTGTTGAGCAACAACCATGTAAATTCTATCATGGTGCACAA
GTTTGACTTCTCCGACGAGGATGTGATGGGCTATTATATACTTTTTTTAA
AGACGCTAAGTCTAAAGTTAAACACTCACACAATACACTTCTTTTACAAT
GAGCACACAAATGACTTTCCCTTGTATACGGAGGCTATTAAGTTCTTTAA
TCATCCCGAGTCAATGGTGAGAATTGCAGTGCGCACCATTTCCTTAAATG
TCTACAAGGTTCAAAATCCAAGCATGTTGCGTTTTATTCGAGACAAAACG
GCTGCTCCATATTTCAGTAATCTGGTCTGGTTTATCGGCAAACACATTCT
TGAACTAGACACTTGTGTTCGCACAGATATAGACCATCAATCGAATCAAA
AGCTGTCCAATTTGGTTGCCGAGCATCTGGATCATTTGCATTATTTGAGT
GACATTCTTCTACTGGAAATCAAGGATCTGAACGCGGTGTTAACCGAGCA
CTTGCTGCATAAGCTATTCGTGCCTCTGTACATATTCTCACTTACACCAG
CTCGCCCCGCCCTCACTGGCAGTGGTTACCCAGAATCTAGCTGCTGTGCT
TAATCGCAATGTGACATCGACATACAGGAAATGCACATCCGCGAGTGAGC
TCATGTGCCCTTTTCCTGCTCTCATTGTCTTCTGTTATTCGCATGCCCTC
TGGGTGCACGCTCTGCTGGTACTCAATGGTGACCCAGGTTTTAGGAGGGT
GCAACCGAATTCTTATTTACTGG
FMO10654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ema-RC | 3473 | CG12753-RC | 242..1372 | 7..1115 | 5035 | 97.4 | Plus |
ema-RB | 3383 | CG12753-RB | 242..1372 | 7..1115 | 5035 | 97.4 | Plus |
ema-RA | 3590 | CG12753-RA | 242..1372 | 7..1115 | 5035 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16440131..16440403 | 1002..734 | 1170 | 97.8 | Minus |
3R | 32079331 | 3R | 16441213..16441420 | 214..7 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 16440808..16440956 | 503..355 | 745 | 100 | Minus |
3R | 32079331 | 3R | 16440608..16440752 | 646..502 | 710 | 99.3 | Minus |
3R | 32079331 | 3R | 16441020..16441159 | 354..215 | 700 | 100 | Minus |
3R | 32079331 | 3R | 16440465..16440551 | 733..647 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:40:29 has no hits.
FMO10654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:20 Download gff for
FMO10654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ema-RB | 235..1363 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:48:40 Download gff for
FMO10654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ema-RA | 236..1364 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:05 Download gff for
FMO10654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ema-RA | 236..1364 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:05 Download gff for
FMO10654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16440608..16440750 | 504..646 | 99 | <- | Minus |
3R | 16440808..16440956 | 355..503 | 100 | <- | Minus |
3R | 16441020..16441159 | 215..354 | 100 | <- | Minus |
3R | 16441213..16441422 | 1..214 | 98 | | Minus |
3R | 16440008..16440403 | 734..1108 | 93 | <- | Minus |
3R | 16440465..16440551 | 647..733 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:48:40 Download gff for
FMO10654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12265730..12266125 | 734..1108 | 93 | <- | Minus |
arm_3R | 12266187..12266273 | 647..733 | 100 | <- | Minus |
arm_3R | 12266330..12266472 | 504..646 | 99 | <- | Minus |
arm_3R | 12266530..12266678 | 355..503 | 100 | <- | Minus |
arm_3R | 12266742..12266881 | 215..354 | 100 | <- | Minus |
arm_3R | 12266935..12267144 | 1..214 | 98 | | Minus |