FMO10655.5prime Sequence
1108 bp (975 high quality bases) assembled on 2011-06-24
> FMO10655.5prime
CACTCGACATGGCGGCGTTGGAACATCCGGATGCCATGCTGCCATACTCC
AAATTGTTGTCAACAGCCCTCACTGTGGCCAGTGGTAACTCGAACTCCTC
CGATGGTACTTTGCTGCTCATCCAGACCAGTGCGGCACCAGGTGGCGATG
TGATGGCCACCGGAGCCGGAGCCGGAAAGTTGGGTGTGCCCTCGATGAAC
TCGTACCTGGTGAGCATGGCGTGGCCCAAGTCGCTGGCAGTGGCCGTCTT
CCTGGTCATCATCCTGGTCACCGTGGTGGGCAACACACTCGTCATCCTCG
CCGTTCTGACCACACGCCGCCTGCGCACCGTAACCAACTGTTTCGTGATG
AACTTGGCCATCACCGACTGGCTGGTCGGCACCTGCGTGATGCCTCCATC
GGTGGTGCTCTACATAACAGGCACTTGGCGCTTTGGCTGGATACTGTGCG
ACATTTGGATCTCGCTGGACATCCTGCTCTGCAGCGGCTCCATCCTCAGC
CTGTGCGCCATCAGTCTGGACAGGTATCTCGCCGTCACACAACCACTGAC
GTACTCCAAGAAGCGCCGATCCAAGCGACTGGCCCTCCTCATGATTCTCG
TCGTGTGGATAACTGCCCTGTCAATCACATGTCCACCCTATTTGGGCTGG
TACGAGGTCGGTCGGCACCAGGCGGAGTTCGTGGACTGCCGCTACAACCA
AAACAAGGGCTACGTGGTCTTCTCGGCGATGGGATCGTTCTTCATTCCCC
TCACCGTGATGCTCTACGTTTACGTGAAGATTGGTTATGTCCTCACGTCA
CGGCGACAGCGCATTGTGCGCGATGCGTACTCGGAGCGCACGGCAGACTA
CGATGTGTATGGGGACAACTTTCATCTCGGAGTCGGAGCACTATCATTGC
ACGCCAACCAGTGGCTGCCGACAGGAAGTCCCCGCCTGGAGGTTCACTCC
CTGCACGACCCCACCACCAGCGCCGCCCCGATGCAGCAGCGTGAGACCCA
GTCGTCCGTCCAGTTGCTCCAGTTTCTCCAAGTGCTCCCTCTTGCCCACT
GGACCTCCTGGACTGGAACTGGACCTGGTGTGGTTAGAACAAAACGCCTG
GACGTTCC
FMO10655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TyrRII-RD | 4089 | CG16766-RD | 778..1865 | 8..1097 | 4860 | 97.3 | Plus |
| TyrRII-RC | 2812 | CG16766-RC | 778..1865 | 8..1097 | 4860 | 97.3 | Plus |
| TyrRII-RB | 2313 | CG16766-RB | 140..1227 | 8..1097 | 4860 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17739934..17740347 | 8..421 | 2070 | 100 | Plus |
| 3R | 32079331 | 3R | 17744122..17744300 | 649..827 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 17741708..17741839 | 521..652 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 17741003..17741110 | 418..525 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 17744978..17745191 | 827..1038 | 430 | 89.4 | Plus |
| 3R | 32079331 | 3R | 17755180..17755270 | 525..435 | 260 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:40:34 has no hits.
FMO10655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:21 Download gff for
FMO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RA | 335..1394 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:49:11 Download gff for
FMO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RA | 335..1394 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:07 Download gff for
FMO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RB | 134..1193 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:07 Download gff for
FMO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17739928..17740346 | 1..420 | 99 | -> | Plus |
| 3R | 17741006..17741108 | 421..523 | 100 | -> | Plus |
| 3R | 17741711..17741836 | 524..649 | 100 | -> | Plus |
| 3R | 17744123..17744300 | 650..827 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:49:11 Download gff for
FMO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13565650..13566068 | 1..420 | 99 | -> | Plus |
| arm_3R | 13566728..13566830 | 421..523 | 100 | -> | Plus |
| arm_3R | 13567433..13567558 | 524..649 | 100 | -> | Plus |
| arm_3R | 13569845..13570022 | 650..827 | 100 | -> | Plus |
