Clone FMO10656 Report

Search the DGRC for FMO10656

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:56
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8247-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10656.5prime Sequence

1178 bp (1049 high quality bases) assembled on 2011-06-24

> FMO10656.5prime
CAGTCGACATGGAAATTTTGCGAACGAAACTAGAGGCCTGCCTGCTGATA
CTGAACAGGAACAATGCAGCAGCTGCAAACTGGCTGAATGACCTGTGCGC
CGTGCTATTGGAATTCGCTACTTTGGCCCACAGCTCCTTCTGCTCCCAGG
GGCAGTCGGAGTGCTCGGAGCTGGTGTGCCTCTGCCTCAGCCAGATTATG
ATCTGCATTCGCCAAGTGGAGAACACCATGAAACTAGAATGCGGCACCAC
AGTCTCGGTAAGTCATCAGTACTTCCTGGACCGCATTCGCTGGTGCCTGA
AGCGCCTCATGCATCTTTACAGCGAAGAATCGAGTTCCGAAGCAGTAGCT
CCGGAGCGCTCGTTCCTTAAGCTGGTGGATGGCGCATTGGATTGTTTGGC
GCAGTTCACCTCGCACAGTGAGGAAAACACCGATACCTCCAACTGTCCAA
AGACTCCCAAGGAAGTCCTTCCACTCAGCCAGAAGTTGCGCGCCAACATT
GATTTGATCTTGGGTCAATCTCTGGGATTCGCCAATGTGGCTTTGTCTCA
GGACAAGAGGGCTCTCAGTGCCTTGTGCCAAAAGGTCATCCGGGAGTGCA
ATGCCTTTCAGGAGGAGTGCAAGGAGTCATTCAGTGCCAACTACCTGTCC
ACCCTTAAGCTGCGGGCCATGACCATGGAACAGGCAATTTACCAATTGGA
GGACTTTATCAACGATGCGCTTTTGCGCTTGGTATTCACATGCTTCCTGG
ACTTCGAGAAGTTTTCGGTAGACAAAATTAGAGCGCTGTTAAAGGACAGC
CCAGATAATGATGATCTGGCCGATGAGTTCATAGCGGACTTTGATGTGAA
CATAGATCGCGCCACCCAGATAGGCATTTTTGCCATTTCCTTTGCGCCCA
ACTTGAAAATGAAAACCATAATGCGCAGCTGTCTGGCCTCCTTTGATCAC
TGGACACCACTCCTGATACCTTCACTGCAGCCCATGATTCCGATTGCCAC
TCGGACATCCTAGAGCAGCACTTTAACGAGGAAGGTGGCCAAGTCCAAGC
AGCGCTTCCGGAAAATCATCGAACAGGCCGCGCCCCTCGTTGATTGTTGC
CCTGAAGATTTCTGAACCCTCAGGATTAGGCCACGAAAGCTTTTCGATAA
AGCCAGGATTGAGACTTGATTCAATCCT

FMO10656.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-RB 2119 CG8247-RB 107..1245 9..1150 5145 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8921951..8922280 586..257 1650 100 Minus
2R 25286936 2R 8921572..8921898 909..583 1605 99.4 Minus
2R 25286936 2R 8922333..8922506 263..90 855 99.4 Minus
2R 25286936 2R 8921354..8921507 1062..910 455 93.6 Minus
2R 25286936 2R 8922568..8922649 90..9 410 100 Minus
Blast to na_te.dros performed 2014-11-26 23:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 2892..2946 26..80 113 67.3 Plus

FMO10656.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:22 Download gff for FMO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 103..1127 9..1032 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:49:43 Download gff for FMO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8247-RB 107..1131 9..1032 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:09 Download gff for FMO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt-RB 107..1131 9..1032 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:09 Download gff for FMO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8922339..8922506 90..257 100 <- Minus
2R 8922569..8922649 9..89 100   Minus
2R 8921572..8921896 585..909 99 <- Minus
2R 8921953..8922279 258..584 100 <- Minus
2R 8921384..8921507 910..1032 95 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:49:43 Download gff for FMO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4809458..4809784 258..584 100 <- Minus
arm_2R 4808889..4809012 910..1032 95 <- Minus
arm_2R 4809077..4809401 585..909 99 <- Minus
arm_2R 4809844..4810011 90..257 100 <- Minus
arm_2R 4810074..4810154 9..89 100   Minus