FMO10656.5prime Sequence
1178 bp (1049 high quality bases) assembled on 2011-06-24
> FMO10656.5prime
CAGTCGACATGGAAATTTTGCGAACGAAACTAGAGGCCTGCCTGCTGATA
CTGAACAGGAACAATGCAGCAGCTGCAAACTGGCTGAATGACCTGTGCGC
CGTGCTATTGGAATTCGCTACTTTGGCCCACAGCTCCTTCTGCTCCCAGG
GGCAGTCGGAGTGCTCGGAGCTGGTGTGCCTCTGCCTCAGCCAGATTATG
ATCTGCATTCGCCAAGTGGAGAACACCATGAAACTAGAATGCGGCACCAC
AGTCTCGGTAAGTCATCAGTACTTCCTGGACCGCATTCGCTGGTGCCTGA
AGCGCCTCATGCATCTTTACAGCGAAGAATCGAGTTCCGAAGCAGTAGCT
CCGGAGCGCTCGTTCCTTAAGCTGGTGGATGGCGCATTGGATTGTTTGGC
GCAGTTCACCTCGCACAGTGAGGAAAACACCGATACCTCCAACTGTCCAA
AGACTCCCAAGGAAGTCCTTCCACTCAGCCAGAAGTTGCGCGCCAACATT
GATTTGATCTTGGGTCAATCTCTGGGATTCGCCAATGTGGCTTTGTCTCA
GGACAAGAGGGCTCTCAGTGCCTTGTGCCAAAAGGTCATCCGGGAGTGCA
ATGCCTTTCAGGAGGAGTGCAAGGAGTCATTCAGTGCCAACTACCTGTCC
ACCCTTAAGCTGCGGGCCATGACCATGGAACAGGCAATTTACCAATTGGA
GGACTTTATCAACGATGCGCTTTTGCGCTTGGTATTCACATGCTTCCTGG
ACTTCGAGAAGTTTTCGGTAGACAAAATTAGAGCGCTGTTAAAGGACAGC
CCAGATAATGATGATCTGGCCGATGAGTTCATAGCGGACTTTGATGTGAA
CATAGATCGCGCCACCCAGATAGGCATTTTTGCCATTTCCTTTGCGCCCA
ACTTGAAAATGAAAACCATAATGCGCAGCTGTCTGGCCTCCTTTGATCAC
TGGACACCACTCCTGATACCTTCACTGCAGCCCATGATTCCGATTGCCAC
TCGGACATCCTAGAGCAGCACTTTAACGAGGAAGGTGGCCAAGTCCAAGC
AGCGCTTCCGGAAAATCATCGAACAGGCCGCGCCCCTCGTTGATTGTTGC
CCTGAAGATTTCTGAACCCTCAGGATTAGGCCACGAAAGCTTTTCGATAA
AGCCAGGATTGAGACTTGATTCAATCCT
FMO10656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-RB | 2119 | CG8247-RB | 107..1245 | 9..1150 | 5145 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8921951..8922280 | 586..257 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 8921572..8921898 | 909..583 | 1605 | 99.4 | Minus |
2R | 25286936 | 2R | 8922333..8922506 | 263..90 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 8921354..8921507 | 1062..910 | 455 | 93.6 | Minus |
2R | 25286936 | 2R | 8922568..8922649 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 2892..2946 | 26..80 | 113 | 67.3 | Plus |
FMO10656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:22 Download gff for
FMO10656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8247-RB | 103..1127 | 9..1032 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:49:43 Download gff for
FMO10656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8247-RB | 107..1131 | 9..1032 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:09 Download gff for
FMO10656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-RB | 107..1131 | 9..1032 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:09 Download gff for
FMO10656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8922339..8922506 | 90..257 | 100 | <- | Minus |
2R | 8922569..8922649 | 9..89 | 100 | | Minus |
2R | 8921572..8921896 | 585..909 | 99 | <- | Minus |
2R | 8921953..8922279 | 258..584 | 100 | <- | Minus |
2R | 8921384..8921507 | 910..1032 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:49:43 Download gff for
FMO10656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4809458..4809784 | 258..584 | 100 | <- | Minus |
arm_2R | 4808889..4809012 | 910..1032 | 95 | <- | Minus |
arm_2R | 4809077..4809401 | 585..909 | 99 | <- | Minus |
arm_2R | 4809844..4810011 | 90..257 | 100 | <- | Minus |
arm_2R | 4810074..4810154 | 9..89 | 100 | | Minus |