FMO10659.5prime Sequence
1104 bp (968 high quality bases) assembled on 2011-06-24
> FMO10659.5prime
CAGTCGACATGTCTTCCTCCGAGGCCGAAGTTGACATCAGTGTGGTGTCC
AGTCCGGAGCCGAGTCCTTTGGGCGCCGCTGCCCGCGACAGTCCGCTGCT
GGCCCGCTCGCCGGCCCGTTCCGCCGACGGCAGTTCGCCCCCGGCCACGC
CTACCCATCGCTCCAATACGCCCAACACGGCCGCCGGCACGCCCACAACG
TCCGCCTCGGGCGGCAATCACTTCCATCACAGTCCCAGCGGAGGCGCTGT
GCCGCCGGCGGTGTTGCACCATCATCTGCAGCACCATCTGAGCAGCCTGG
GCAGCCATCCGGTGGCGCTGCATCACGCGCTCCACACCTTTGGCCACTTG
CATCCCGCCCACGGGGCCACACATCCCGCCCTGCTGCAGCACGCACTCAC
GCCCACCGGCCAGCAGCAGCAGCAACAGTTGCAGGTGCAGCAGCAACACC
AGCAGTCGCATGTCGAGCGCCTTAGTCCGCCAATGAAGAGTCCGGAGCGG
AATGGCGGCGATGAGGTGCAAGGACACAGTCTGAACAACAACAACAGTAA
GGCCCTCAATCACAACAACACTTGCGCCTCGGCGGCCGCAGCGGCGGCAG
CAGCAGCGGTGGCAGCGGCCAACCTGAGCAACAACAGCAACGACAGCAAC
GGGAGCAGCGGGGGCGGCGGCGGCAAGAGCACCACCGGCTCCAACGGATT
CACCAGCTTCTCCATCTCCAGCATCCTGAGTCGCAGTGAGCCGGCCAGAA
GAACGGCGCCGCCGGACTTATCACTCCGATCCCGCAGTTGCCGCACCAGG
AGCCGGCGGTCCACAGGATGCGGCCATGTTGTCCAGATTGGGTTTCATAT
CGCAGTGGGGAGCGTTGGCCGGTCGCTATGCCGCCCTGTGTCCGCCCGGG
ATGGCCCTGGGCCCCAGCGACTGCCCTCCACAGTCCACCATGACAGCTCT
CGACGAACACGACCGAGAATCCGCATCGCCCACTTCCATGAGCCCGAAAC
ACAATAATAACACCGCAACACCACTGCCAGCTCGAACAAGCAAGCAATCG
GCCTCCCACCACTCACTGCACACTCCCATGTACCATCCCTCGGGCTCGGA
ACAA
FMO10659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmx-RE | 3384 | CG43748-RE | 435..1537 | 9..1103 | 4985 | 97.6 | Plus |
Hmx-RD | 2691 | CG43748-RD | 435..1537 | 9..1103 | 4985 | 97.6 | Plus |
Hmx-RC | 2691 | CG43748-RC | 435..1537 | 9..1103 | 4985 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17559364..17560193 | 9..836 | 4050 | 99.8 | Plus |
3R | 32079331 | 3R | 17565451..17565545 | 834..927 | 365 | 96.9 | Plus |
3R | 32079331 | 3R | 17567095..17567250 | 949..1103 | 335 | 88.1 | Plus |
Blast to na_te.dros performed 2014-11-26 23:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2510 | 534..736 | 267 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6941 | 514..725 | 267 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2504 | 542..736 | 244 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6513..6857 | 391..725 | 230 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6879 | 580..735 | 218 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6893 | 563..725 | 212 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6922 | 534..661 | 197 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2436 | 593..725 | 194 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2415 | 627..725 | 180 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2794..2970 | 514..689 | 171 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6838 | 627..736 | 171 | 62.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1151 | 589..659 | 163 | 71.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2970 | 412..803 | 158 | 54.4 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 610..703 | 671..580 | 141 | 62.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1522..1591 | 627..695 | 140 | 68.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1074..1164 | 627..717 | 140 | 61.5 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 946..1032 | 727..644 | 132 | 69.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2658 | 592..659 | 121 | 66.2 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5587..5693 | 555..671 | 120 | 61.5 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7042..7148 | 555..671 | 111 | 60.7 | Plus |
FMO10659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:49 Download gff for
FMO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmx-RC | 435..1499 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:23:17 Download gff for
FMO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmx-RC | 435..1499 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:33 Download gff for
FMO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmx-RC | 435..1499 | 9..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:33 Download gff for
FMO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17559364..17560193 | 9..836 | 99 | -> | Plus |
3R | 17565454..17565563 | 837..942 | 94 | -> | Plus |
3R | 17567088..17567212 | 943..1062 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:23:17 Download gff for
FMO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13385086..13385915 | 9..836 | 99 | -> | Plus |
arm_3R | 13391176..13391285 | 837..942 | 94 | -> | Plus |
arm_3R | 13392810..13392934 | 943..1062 | 91 | | Plus |