Clone FMO10659 Report

Search the DGRC for FMO10659

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:59
Vector:pMK33-CFH-BD
Associated Gene/TranscriptHmx-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10659.5prime Sequence

1104 bp (968 high quality bases) assembled on 2011-06-24

> FMO10659.5prime
CAGTCGACATGTCTTCCTCCGAGGCCGAAGTTGACATCAGTGTGGTGTCC
AGTCCGGAGCCGAGTCCTTTGGGCGCCGCTGCCCGCGACAGTCCGCTGCT
GGCCCGCTCGCCGGCCCGTTCCGCCGACGGCAGTTCGCCCCCGGCCACGC
CTACCCATCGCTCCAATACGCCCAACACGGCCGCCGGCACGCCCACAACG
TCCGCCTCGGGCGGCAATCACTTCCATCACAGTCCCAGCGGAGGCGCTGT
GCCGCCGGCGGTGTTGCACCATCATCTGCAGCACCATCTGAGCAGCCTGG
GCAGCCATCCGGTGGCGCTGCATCACGCGCTCCACACCTTTGGCCACTTG
CATCCCGCCCACGGGGCCACACATCCCGCCCTGCTGCAGCACGCACTCAC
GCCCACCGGCCAGCAGCAGCAGCAACAGTTGCAGGTGCAGCAGCAACACC
AGCAGTCGCATGTCGAGCGCCTTAGTCCGCCAATGAAGAGTCCGGAGCGG
AATGGCGGCGATGAGGTGCAAGGACACAGTCTGAACAACAACAACAGTAA
GGCCCTCAATCACAACAACACTTGCGCCTCGGCGGCCGCAGCGGCGGCAG
CAGCAGCGGTGGCAGCGGCCAACCTGAGCAACAACAGCAACGACAGCAAC
GGGAGCAGCGGGGGCGGCGGCGGCAAGAGCACCACCGGCTCCAACGGATT
CACCAGCTTCTCCATCTCCAGCATCCTGAGTCGCAGTGAGCCGGCCAGAA
GAACGGCGCCGCCGGACTTATCACTCCGATCCCGCAGTTGCCGCACCAGG
AGCCGGCGGTCCACAGGATGCGGCCATGTTGTCCAGATTGGGTTTCATAT
CGCAGTGGGGAGCGTTGGCCGGTCGCTATGCCGCCCTGTGTCCGCCCGGG
ATGGCCCTGGGCCCCAGCGACTGCCCTCCACAGTCCACCATGACAGCTCT
CGACGAACACGACCGAGAATCCGCATCGCCCACTTCCATGAGCCCGAAAC
ACAATAATAACACCGCAACACCACTGCCAGCTCGAACAAGCAAGCAATCG
GCCTCCCACCACTCACTGCACACTCCCATGTACCATCCCTCGGGCTCGGA
ACAA

FMO10659.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hmx-RE 3384 CG43748-RE 435..1537 9..1103 4985 97.6 Plus
Hmx-RD 2691 CG43748-RD 435..1537 9..1103 4985 97.6 Plus
Hmx-RC 2691 CG43748-RC 435..1537 9..1103 4985 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17559364..17560193 9..836 4050 99.8 Plus
3R 32079331 3R 17565451..17565545 834..927 365 96.9 Plus
3R 32079331 3R 17567095..17567250 949..1103 335 88.1 Plus
Blast to na_te.dros performed 2014-11-26 23:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2510 534..736 267 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6941 514..725 267 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2504 542..736 244 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6513..6857 391..725 230 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6879 580..735 218 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6893 563..725 212 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6922 534..661 197 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2436 593..725 194 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2415 627..725 180 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2794..2970 514..689 171 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6838 627..736 171 62.8 Plus
roo 9092 roo DM_ROO 9092bp 1082..1151 589..659 163 71.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2970 412..803 158 54.4 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 610..703 671..580 141 62.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1522..1591 627..695 140 68.6 Plus
roo 9092 roo DM_ROO 9092bp 1074..1164 627..717 140 61.5 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 946..1032 727..644 132 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2592..2658 592..659 121 66.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5587..5693 555..671 120 61.5 Plus
TART-C 11124 TART-C TARTC 11124bp 7042..7148 555..671 111 60.7 Plus

FMO10659.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:49 Download gff for FMO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmx-RC 435..1499 9..1062 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:23:17 Download gff for FMO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmx-RC 435..1499 9..1062 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:33 Download gff for FMO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmx-RC 435..1499 9..1062 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:33 Download gff for FMO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17559364..17560193 9..836 99 -> Plus
3R 17565454..17565563 837..942 94 -> Plus
3R 17567088..17567212 943..1062 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:23:17 Download gff for FMO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13385086..13385915 9..836 99 -> Plus
arm_3R 13391176..13391285 837..942 94 -> Plus
arm_3R 13392810..13392934 943..1062 91   Plus