FMO10661.5prime Sequence
1142 bp (1006 high quality bases) assembled on 2011-06-24
> FMO10661.5prime
CAGTCGACATGGCCCAAAAGCAGGTGCTAGTCTTAAACCTATTTTGCCTG
GGCTCACTATTTTTCAAAACAGTGCCAGCTTCCACGGAATACAACAAATA
CGTGGCGCAGATATTTCAAAAATACGGCAACGGCGGGACAATCAACTTTG
AGGGTCTTGAGCATTTGATGTTCAGCCTGAACTTGGGTCAAATCCAATTC
GATCCCTCGCACACGATCGATCAGCATCGACCTCAGGGATACTCGAACGA
GATGCCGCATGCCACAAATGTAACGTATTACTTTGAGCCGACACGAGTCA
ATGCCACCGATGAGGAAGCTTTGGAGCTGCAAATCTCTCCTCGTGGCAAT
CACTCAAATTCACAGTCGGAGGCCGAGGTTCCGGAGTTCCTAGAAATTCA
TGACCCCAAGCACCGACATCCGAGGGAGAGTTCTGAACCTGTTGCCGCTT
GCTTATCACCGAAGTCTTTACTTTCCCTCATCGTGAACCACAACGATCTC
CACAAAAACATTGCCTACCGCAAGCTGCTCATTAAGAATGACGTTAGCTC
AACTGATGGCGTCCACAATTCTGAAGAGGAATACAACGAATTCATCAACT
CGGTGCGGATCACTCCGCGAGCTTTTATGAAACTCTGTCCAGCTCTATTA
GCCCAGATCGATAATGGAGTTTGCAAGCAACCAGCTGTACGATCAGTAAA
CCTTAACGATAAGAACCAGAAGATATGGTACGCTTGGATCTATGCCAGCA
TCACTATGCTTATACTGTCCGCTTGCGGATTGCTGGGCATTCTTCTGGTT
CCTTTGATGAAGTCAGCTGCCTATCAGAAATTCTCAAGTTCCTAGTTTCC
ATCGCTGTGGGCACTTTAGCTGGCGATGCCCTGATGCACTTGCTCCCCAT
GCCCTTTTCAAGGAGGAAAAGCACGAGAGGAGTCACTGGTATCATCCCTT
GATCTGATCACAAACATAGCAATGAGCGGCTCTGCTATGTGATGTACTTT
CTGGCTGCTCTATTCATGTATATGCTGAAACTGATCCGCTGCTAAGGCGT
AGCGGTCATGACATAGCCACGACATGGTTCCAGCCGCCGCATCATGACAT
TGGAAGCGCGCAAGATGCATTGATCTGCCACCTCCTCGAGAG
FMO10661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip71B-RC | 2391 | CG10006-RC | 184..1353 | 9..1142 | 4975 | 96.5 | Plus |
| Zip71B-RB | 2225 | CG10006-RB | 184..1353 | 9..1142 | 4975 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14996141..14996442 | 431..732 | 1495 | 99.7 | Plus |
| 3L | 28110227 | 3L | 14994581..14994865 | 151..435 | 1425 | 100 | Plus |
| 3L | 28110227 | 3L | 14996499..14996804 | 732..1027 | 1040 | 95.4 | Plus |
| 3L | 28110227 | 3L | 14992472..14992616 | 9..153 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:40:53 has no hits.
FMO10661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:24 Download gff for
FMO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10006-RB | 177..1212 | 1..1027 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:51:18 Download gff for
FMO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10006-RB | 177..1212 | 1..1027 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:13 Download gff for
FMO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip71B-RB | 177..1212 | 1..1027 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:13 Download gff for
FMO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14996146..14996442 | 436..732 | 100 | -> | Plus |
| 3L | 14996500..14996804 | 733..1027 | 96 | == | Plus |
| 3L | 14992465..14992615 | 1..152 | 97 | -> | Plus |
| 3L | 14994583..14994865 | 153..435 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:51:18 Download gff for
FMO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14985565..14985715 | 1..152 | 97 | -> | Plus |
| arm_3L | 14987683..14987965 | 153..435 | 100 | -> | Plus |
| arm_3L | 14989246..14989542 | 436..732 | 100 | -> | Plus |
| arm_3L | 14989600..14989904 | 733..1027 | 96 | == | Plus |
