FMO10662.5prime Sequence
1153 bp (1024 high quality bases) assembled on 2011-06-24
> FMO10662.5prime
CAGTCGACATGTTCTGGCTGGGATTCGGATTGCTGTTGCTCGCGTTGTCC
CTATACCTGCTATATGTCTTCGAGCGGCAGAGCAGGATCGACCGGCTCAC
CCACAAATGGCCAGCCCCACCGGCCCTGCCATTCATTGGCCATCTGCACA
TTCTAGCCAAATTGGTGGGACCGCATCCACTTCGACGAGCCACCGAAATG
ATCAACGAACATCTACACGATCATCGAGCAAAACTATGGATGGGCACTAA
GCTCTATCTCGTGGACTGCAATCCCAAGGATATACAGGCTCTGTGCAGTG
CCCAGCAGCTGCTGCAGAAGACCAACGACTATAGGGTCTTCGAGAACTGG
CTCTGCGAGGGTCTCTTCACCAGTGGATTCGAGAAGTGGTCCCATCGCCG
GAAGATCGTAATGCCGGCCTTCAACTACACCATGATCAAACAGTTTGTTG
CCGTCTTTGAGAAGCAGTCGAGGATTCTTTTGACGAATGTCGCTAAATTT
GCCGAGTCCGGGGATCAAATTGACTTTCTGCAACTGATCAGCTGCTTCAC
TTTGGACACTATTTGTGAAACGGCCCTCGGAGTCTCTGTGGGTTCGCAGT
CGAGCGCCAAGTCGGAATACCTCGATGCTGTTAAATCAATCCTTGTCATC
ATCGATAAGCGACTGAAGAACATCTTCTACCGCAACTCGTTTATTTTCAA
ACGCACATCGCATTATAAGCGAGAACAGGAGCTGATAAAAACGCTTCACG
GATTCACAGAGGGCATTATACAGAAACGTATTGATGAAATCAACCAGGAT
GCAGAGAATCGCAACTACCAGAGCAGTGATGCGGAATTGGACGGAGTGAA
GCGGACCCTATGCTTTCTGGACACCTTGCTACTGTCCAAGGGTCCCGATG
GCAAGCCTTTGACAGTCAAGGATATTCGCGAGGAGTGGACCCATCATATT
TGGGGGATTCGATCTCACGGCCACCACCCTCAACTTTTTCATGTATAACA
TGACTCTTCATCAGGAGCAACAGCAGCGATGTCGGGGAGGAGGTGGGGTC
CGTATGCGGCCAGGACAAAGGTGAACCCAATCTCATGAGCAGGTGCCGCC
CACCTGAGTTCCTTGGAGGCGTGTATAAGGAACCTCGCGGATGTAACCCT
TCA
FMO10662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp312a1-RB | 3383 | CG5137-RB | 624..1762 | 9..1145 | 5300 | 98.2 | Plus |
| Cyp312a1-RA | 1628 | CG5137-RA | 30..1168 | 9..1145 | 5300 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18131438..18132066 | 637..9 | 3145 | 100 | Minus |
| 3L | 28110227 | 3L | 18130688..18131130 | 1079..638 | 1965 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:40:58 has no hits.
FMO10662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:24 Download gff for
FMO10662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 160..1195 | 1..1034 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:51:47 Download gff for
FMO10662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 22..1057 | 1..1034 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:14 Download gff for
FMO10662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 22..1057 | 1..1034 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:14 Download gff for
FMO10662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18130732..18131130 | 638..1034 | 98 | <- | Minus |
| 3L | 18131438..18132073 | 1..637 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:51:47 Download gff for
FMO10662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18123832..18124230 | 638..1034 | 98 | <- | Minus |
| arm_3L | 18124538..18125173 | 1..637 | 99 | | Minus |
