FMO10664.5prime Sequence
1046 bp (909 high quality bases) assembled on 2011-06-24
> FMO10664.5prime
CAGTCGACATGCCAGATAGATTTCAAGTTACAAAGGCTGACGAGGACACC
GCGTTGGACTACAACCAGGATGAGTCTGCGAGCGGCAAGCTACTGGGGGA
CATCCACGACGAAACCCTAGGTGAGAACTATGGGTCGTACGATGACTCAG
GTGATATCCACAGGGCGGAGGAGAACCAGAAGTCCAGCATCGACCCAAAT
CTATATCTGTACGACGATGATTTGGAGACCAGGCCCCATATATCAACGTT
CATTTCATCAATTGCCAATTATGAGAACACGATACCAGCGGCCACCGATC
CCGATGCAAAGCCGGCAGCTCCATCGGCTCGAATGGGTACCCTAATTGGA
GTGTTCTTGCCATGCATTCAAAACATCTTTGGTGTCATATTGTTCATTCG
GTTAACATGGGTTGTTGGAACGGCTGGCGCCGTGTGTGGATTCCTGATTG
TTCTGACCTGCTGCTGTGTGACCATGCTAACCGCGATCTCGATGTCGGCC
ATTGCAACGAACGGGGTGGTTCCGGCGGGCGGGAGTTACTTCATGATATC
ACGATCCCTGGGCCCTGAATTCGGCGGAGCGGTGGGAATGTTGTTCTATA
CGGGCACCACGCTAGCAGCGGCGATGTACATCGTTGGTGCCGTAAAATCG
TATTGACATACATGGCGCCGTGTGCATCGATATTTGGGGACTTCACCAAG
GACGCTGACGCGATGTACAACAATTTCAGGTCTACGGCACTTTGCTGCTC
ATCTTTATGGGTCTCATTGTGTTCCTGGGCGTGAAATTCGTCAATAAGTT
CGCGACGGTGGCCCTGGCCTGCGTCATCCTTTCGATAATAGCGGTGTATG
TGGGATATTTGACATATCATGCAACGAAAGCTATACATGTGTGTCTGGAA
ACGACTCTGAGATATCCGCTGAAATTGCACAAAGAGACTCTTCTACCCGA
CTATACTGCCCAGATGTAATGCAGAATACTACTACATAACGTGACAAAGT
CAAGCATCAGTTGCATGCGTGTTCACGAAACTCTTCTCGTCTGAAG
FMO10664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RD | 3883 | CG5594-RD | 502..1527 | 9..1004 | 4360 | 96.7 | Plus |
| kcc-RA | 3543 | CG5594-RA | 255..1280 | 9..1004 | 4360 | 96.7 | Plus |
| kcc-RE | 4154 | CG5594-RE | 773..1798 | 9..1004 | 4360 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23911676..23911871 | 144..339 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 23909698..23909833 | 9..144 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 23912187..23912321 | 336..470 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 23912728..23912836 | 655..762 | 480 | 98.2 | Plus |
| 2R | 25286936 | 2R | 23912896..23912991 | 760..855 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 23912531..23912621 | 553..643 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 23912383..23912466 | 470..553 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:41:07 has no hits.
FMO10664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:26 Download gff for
FMO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RD | 525..1523 | 9..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:52:45 Download gff for
FMO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RE | 773..1771 | 9..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:16 Download gff for
FMO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RE | 773..1771 | 9..982 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:16 Download gff for
FMO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23909698..23909833 | 9..144 | 100 | -> | Plus |
| 2R | 23911677..23911868 | 145..336 | 100 | -> | Plus |
| 2R | 23912188..23912321 | 337..470 | 100 | -> | Plus |
| 2R | 23912384..23912466 | 471..553 | 100 | -> | Plus |
| 2R | 23912532..23912634 | 554..655 | 98 | -> | Plus |
| 2R | 23912729..23912834 | 656..760 | 98 | -> | Plus |
| 2R | 23912897..23912991 | 761..855 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:52:45 Download gff for
FMO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19799711..19799844 | 337..470 | 100 | -> | Plus |
| arm_2R | 19799907..19799989 | 471..553 | 100 | -> | Plus |
| arm_2R | 19800055..19800157 | 554..655 | 98 | -> | Plus |
| arm_2R | 19800252..19800357 | 656..760 | 98 | -> | Plus |
| arm_2R | 19800420..19800514 | 761..855 | 100 | == | Plus |
| arm_2R | 19799200..19799391 | 145..336 | 100 | -> | Plus |
| arm_2R | 19797221..19797356 | 9..144 | 100 | -> | Plus |
