FMO10668.5prime Sequence
1127 bp (988 high quality bases) assembled on 2011-06-24
> FMO10668.5prime
CAGTCGACATGGAAATACCCATTCAGGTAGCGGTGCGCATCTTCCCGCAT
AGAGAGCTCAAGGACTTGTTGAGGAGCTTCGGCCCCACAGAGCCCAAAAA
GGATGCGCAGGCGGTGGATGAGGGGGCGGACTCCAAGGACTCCGAGGCTC
AAGTTCCGGCGGCTGAGAAGGACAATCCGTCAATTTCAGAGACGGACCCA
AACGGGAATGCTGAGCAGGACAGTGCGGCCGATTCGAAGACAATTCCAGA
TGCCAATGGCAACGACAGTGGTCAGAAGGATTACCCAGACTCCGCATATT
GCGTTCAGGCTATTCCCATCAGCGCTTCGGCCCTGGGATTGCCCAGTGCC
CTGCCAGGCGGAGATCCCATGGACAGCATTGCAGCTGGACTGATACAAGT
CGGTCCCCACACGGTTCCGGTCACCCACGCCCTGCCCAGCAGCAGCTCCC
AGGAGCAAGTGTACCACCAGACGGTCTTTCCGCTCATCACCCTGTTCCTG
GAAGGTTTCGACGCATCTGTAGTCACCTATGGCCAGAGGGGCCAGGGCAA
AAGCTACACACTCTACGGAAACGTCCAGGACCCTACTCTGACGGATTCCA
CCGAAGGAGTCGTCCAACTTTGTGTCCGTGACATTTTCTCACACATATCG
TTGCACCCAGAACGCACCTATGCCATCAACGTGGGATTCGTGGAAATTTG
CGGAGGTGATGTCTGCGACTTGTTGGGCATGGGAAACATACACTGCACCA
ACGTAGATGCCGTCTTCCACTGGTTGCAGGTGGGTCTGTCGGCCCGCCCA
TCGTTGCCGGCGCACACCCTGTTCACGCTTACCCTGAGCAGCAGTGGGTG
TCCAAAGGAGGGGCTGTTGCAGCACCGCTTGTCCACGGCCAGTTTTCTCG
GATCTCTGCGGCACAGAGAGATGTGAGACCAGCCACCGGGACGTCCTCTC
GATGCTGGCCTGTGTATGCTGGAGCAGTGATCAGTACTCCCACAGAATCC
AGGCCTCCATGTACGGGTTAATGGCCAAATTCCGTACCGTCAGACACGCC
TCACCACTCCTCCTGGAAGAACTCGTTTCGGCGGACGGCCTCAAACGCCT
CTGATTCTGTTGCGGGTTCAACCGCCT
FMO10668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cos-RB | 4416 | CG1708-RB | 136..1223 | 8..1098 | 5035 | 98.1 | Plus |
cos-RA | 4763 | CG1708-RA | 136..1223 | 8..1098 | 5035 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7386328..7386980 | 660..8 | 3265 | 100 | Minus |
2R | 25286936 | 2R | 7385871..7386271 | 1059..659 | 1490 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:41:21 has no hits.
FMO10668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:28 Download gff for
FMO10668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cos-RA | 130..1232 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:54:19 Download gff for
FMO10668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cos-RA | 133..1235 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:23 Download gff for
FMO10668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cos-RA | 133..1235 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:23 Download gff for
FMO10668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7385810..7386269 | 661..1127 | 93 | <- | Minus |
2R | 7386328..7386983 | 1..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:54:19 Download gff for
FMO10668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3273315..3273774 | 661..1127 | 93 | <- | Minus |
arm_2R | 3273833..3274488 | 1..660 | 99 | | Minus |