Clone FMO10668 Report

Search the DGRC for FMO10668

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:68
Vector:pMK33-CFH-BD
Associated Gene/Transcriptcos-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10668.5prime Sequence

1127 bp (988 high quality bases) assembled on 2011-06-24

> FMO10668.5prime
CAGTCGACATGGAAATACCCATTCAGGTAGCGGTGCGCATCTTCCCGCAT
AGAGAGCTCAAGGACTTGTTGAGGAGCTTCGGCCCCACAGAGCCCAAAAA
GGATGCGCAGGCGGTGGATGAGGGGGCGGACTCCAAGGACTCCGAGGCTC
AAGTTCCGGCGGCTGAGAAGGACAATCCGTCAATTTCAGAGACGGACCCA
AACGGGAATGCTGAGCAGGACAGTGCGGCCGATTCGAAGACAATTCCAGA
TGCCAATGGCAACGACAGTGGTCAGAAGGATTACCCAGACTCCGCATATT
GCGTTCAGGCTATTCCCATCAGCGCTTCGGCCCTGGGATTGCCCAGTGCC
CTGCCAGGCGGAGATCCCATGGACAGCATTGCAGCTGGACTGATACAAGT
CGGTCCCCACACGGTTCCGGTCACCCACGCCCTGCCCAGCAGCAGCTCCC
AGGAGCAAGTGTACCACCAGACGGTCTTTCCGCTCATCACCCTGTTCCTG
GAAGGTTTCGACGCATCTGTAGTCACCTATGGCCAGAGGGGCCAGGGCAA
AAGCTACACACTCTACGGAAACGTCCAGGACCCTACTCTGACGGATTCCA
CCGAAGGAGTCGTCCAACTTTGTGTCCGTGACATTTTCTCACACATATCG
TTGCACCCAGAACGCACCTATGCCATCAACGTGGGATTCGTGGAAATTTG
CGGAGGTGATGTCTGCGACTTGTTGGGCATGGGAAACATACACTGCACCA
ACGTAGATGCCGTCTTCCACTGGTTGCAGGTGGGTCTGTCGGCCCGCCCA
TCGTTGCCGGCGCACACCCTGTTCACGCTTACCCTGAGCAGCAGTGGGTG
TCCAAAGGAGGGGCTGTTGCAGCACCGCTTGTCCACGGCCAGTTTTCTCG
GATCTCTGCGGCACAGAGAGATGTGAGACCAGCCACCGGGACGTCCTCTC
GATGCTGGCCTGTGTATGCTGGAGCAGTGATCAGTACTCCCACAGAATCC
AGGCCTCCATGTACGGGTTAATGGCCAAATTCCGTACCGTCAGACACGCC
TCACCACTCCTCCTGGAAGAACTCGTTTCGGCGGACGGCCTCAAACGCCT
CTGATTCTGTTGCGGGTTCAACCGCCT

FMO10668.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
cos-RB 4416 CG1708-RB 136..1223 8..1098 5035 98.1 Plus
cos-RA 4763 CG1708-RA 136..1223 8..1098 5035 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7386328..7386980 660..8 3265 100 Minus
2R 25286936 2R 7385871..7386271 1059..659 1490 95.8 Minus
Blast to na_te.dros performed on 2014-11-26 23:41:21 has no hits.

FMO10668.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:28 Download gff for FMO10668.5prime
Subject Subject Range Query Range Percent Splice Strand
cos-RA 130..1232 1..1110 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:54:19 Download gff for FMO10668.5prime
Subject Subject Range Query Range Percent Splice Strand
cos-RA 133..1235 1..1110 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:23 Download gff for FMO10668.5prime
Subject Subject Range Query Range Percent Splice Strand
cos-RA 133..1235 1..1110 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:23 Download gff for FMO10668.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7385810..7386269 661..1127 93 <- Minus
2R 7386328..7386983 1..660 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:54:19 Download gff for FMO10668.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3273315..3273774 661..1127 93 <- Minus
arm_2R 3273833..3274488 1..660 99   Minus