FMO10669.5prime Sequence
1137 bp (1000 high quality bases) assembled on 2011-06-24
> FMO10669.5prime
CAGTCGACATGACTGTCTCGTATGCGGGTGAAGTGCCAAATGGGAGCAGC
TTTGGCTGTTTCTGGAAGATCCTGTGGAAATGGCGAGGCAGCGTTTACAA
ATTGATTTGGCGCGAATTAGTTGCGTATCTGTGTTTATACTATACCATAA
ATGTTATCTACAGATTTGGTCTGACAGAAAGTCAGCAAGCCATTTTTAAA
AAAATTCGCCTTTATTTTGGGCAGCAGAGTGAAAGTATACCCATGTCCTT
TGTGCTGGGCTTCTATGTGAATCTGGTGGTGAAACGTTGGTGGGAGCAAT
ATAGGCTTTTGCCCTGGCCAGATACGTTGGCCCTGTTCATAAGCGCGGCT
ATTCCCAACTCAAATGGCGGTGTAAATAATGAAACGGGTCGCCTGATGCG
TCGTAATATCATGCGCTATATGGTCTTGGCCTATGTGATTACCCTTCAGC
GAATTTCCCTTCGTGTAAAACGTCGTTTTCCCACAACCCAACATCTCGTG
GATGCGGGTCTGATGCACGAATCGGAGATGAAAATCTTTGAGGCACTGAA
TCAGAAGAGTCCCATGTCCAAATACTGGATGCCTCTCGTTTGGGCTACCA
ACATCATAAACCGGGCCAGAAAGGATGGCCTAATCGCCTCGGATCATATT
GTGCAAACCATACTGGTAGAGCTCTCGGATATTCGTAGACGTTTAGGTGG
TCTTATTGGATACGACACGGTCTGTGTTCCTTTGGTCTACACTCAGTAGT
CACCCTGGTGCTGTACACCTATTTCATAGCTGCCCTTTTGGGCCGTCAAA
TGTTGCCCAACGTTCTGGACAGAAGTGGACGCGAAGATCCCGATCTGTTC
TTCCCCCTGTTTACCGTATTGCAGTTTGTTTTCTACGTGGGCTGGCTGAA
TGTGGCCGAAGTGCTAATCAATCCCTTTTGCCGAGATGACGATGATATCG
AGCTGAACTGGCCTAATTGACCGACACATCAAGCTGCCTACATGATCGTG
GACGAGATGCACGAGACACCCGAGCTGCTGCGGGATCAGTACTGGGAAGT
GTGTGGTGCCAAGGATCTGCCTATACGGTGCATTCGAACCACTACCGAAA
GACAAGTCCAAGCCTCCGCCGGAGAAGTACAGGTCAG
FMO10669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best2-RA | 3547 | CG10173-RA | 413..1547 | 9..1136 | 5185 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6251580..6251948 | 746..378 | 1845 | 100 | Minus |
| 3L | 28110227 | 3L | 6252008..6252194 | 377..191 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 6251371..6251499 | 874..746 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 6252259..6252369 | 190..80 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 6250610..6250723 | 983..869 | 450 | 94.8 | Minus |
| 3L | 28110227 | 3L | 6253500..6253570 | 79..9 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:41:25 has no hits.
FMO10669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:28 Download gff for
FMO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best2-RA | 406..1533 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:54:49 Download gff for
FMO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best2-RA | 405..1532 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:23 Download gff for
FMO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best2-RA | 405..1532 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:23 Download gff for
FMO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6252008..6252194 | 191..377 | 100 | <- | Minus |
| 3L | 6252259..6252369 | 80..190 | 100 | <- | Minus |
| 3L | 6253500..6253575 | 1..79 | 94 | | Minus |
| 3L | 6250610..6250717 | 875..983 | 94 | <- | Minus |
| 3L | 6251371..6251499 | 747..874 | 99 | <- | Minus |
| 3L | 6251580..6251948 | 378..746 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:54:49 Download gff for
FMO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6243710..6243817 | 875..983 | 94 | <- | Minus |
| arm_3L | 6244471..6244599 | 747..874 | 99 | <- | Minus |
| arm_3L | 6244680..6245048 | 378..746 | 100 | <- | Minus |
| arm_3L | 6245108..6245294 | 191..377 | 100 | <- | Minus |
| arm_3L | 6245359..6245469 | 80..190 | 100 | <- | Minus |
| arm_3L | 6246600..6246675 | 1..79 | 94 | | Minus |
