FMO10678.5prime Sequence
1112 bp (995 high quality bases) assembled on 2011-06-24
> FMO10678.5prime
CAGTCGACATGAAGTCGAGGGAAAAGAATGGGTCTGCGGCTAGTAACTCG
GACGTGGCACTGGTCAATGTTTTATCGCAGCAAAAGCTGAGAAGGCACAG
ATTGCCCTGGTACTACGCACCATCCTTTCTCCTCCTATGGGTGGCTCTAT
TCTACGCAGTGGTATATCCTTTGTACCATCGCCTGCCCGATAGCGTCCTT
ATATCGCATGAATCGAGTAAACCTGGACAATTTGTGGCGGAGAGGGCGCA
AAGGCTGCTCTACAAATACGACAAGATCGGACCCAAGGTGGTGGGCAGTG
TGGCGAATGAGGTGACAACGGTGGCCTTTCTCGAAGAGGAGGTGGAGAAC
ATCCGGGCGGCAATGCGCAGTGATCTCTACGAGCTGCAGCTGGATGTCCA
ACATCCCTCGGGCGCCTACATGCATTGGCAGATGGTGAACATGTACCAGG
GCGTCACGAATGTGGTTGTTAAGATTAGTAGCCGGAGCTCCAATAGTTCA
TCCTACCTGCTGGTGAACAGTCATTTCGATTCCAAGCCCAGCAGTCCTGG
TTCCGGCGACGATGGCACCATGGTTGTGGTCATGCTGGAAGTCCTTCGCC
AGGTGGCCATATCGGACACCCCATTCGAACATCCCATTGTGTTTCTGTTC
AACGGAGCTGAGGAAAATCCTTTGGAGGCATCGCACGGCTTTATTACCCA
ACATAAATGGGCGGGAAACTGCAAAGCTCTCATAAATCTGGAAGTGGCAG
CAGCGGAGGTCGTGACCTGTTGTTCCAGAGTGGACCGAATAATCCGTGGC
TGATCAAGTACTATTACCAGAATGCTAAACATCCGTTTGCCACCACAATG
GCCGAGGAATATTTCAGTCTGGCATTTGCCATCCGATACGGATTTCCGTA
TCTTTCGCGACTACGGACACTGCCAGGCCTTGACATGCGCAAATCAGCAA
TGGCTATGTATACATACCATTTTGATAATGTCAGCCGGTGCCCATGAATC
CCTACAGTTCTGGAGACATGCCTTTATCTCTGGTGCGCTTTCGCTGATGC
GCTGAATGCAATCAAGATCCAAGCGAGAACGCTGTTTCTTGACTATCTGG
ACTTTCTTGGTA
FMO10678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30047-RA | 2809 | CG30047-RA | 43..1105 | 3..1052 | 4920 | 98.3 | Plus |
CG30043-RA | 3082 | CG30043-RA | 485..922 | 432..867 | 760 | 78.8 | Plus |
CG30049-RA | 2796 | CG30049-RA | 141..953 | 108..917 | 510 | 71.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12351920..12352441 | 30..551 | 2610 | 100 | Plus |
2R | 25286936 | 2R | 12352496..12352671 | 549..724 | 880 | 100 | Plus |
2R | 25286936 | 2R | 12353040..12353154 | 807..919 | 475 | 98.3 | Plus |
2R | 25286936 | 2R | 12360157..12360329 | 552..724 | 460 | 84.4 | Plus |
2R | 25286936 | 2R | 12352728..12352818 | 719..808 | 375 | 96.7 | Plus |
2R | 25286936 | 2R | 19377593..19377675 | 630..712 | 265 | 88 | Plus |
2R | 25286936 | 2R | 12353220..12353356 | 925..1052 | 215 | 89.1 | Plus |
2R | 25286936 | 2R | 12367917..12368039 | 423..545 | 210 | 78 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:37:06 has no hits.
FMO10678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:53 Download gff for
FMO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30047-RA | 41..1178 | 1..1111 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:27:07 Download gff for
FMO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30047-RA | 41..1178 | 1..1111 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:46 Download gff for
FMO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30047-RA | 41..1178 | 1..1111 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:46 Download gff for
FMO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12351833..12351861 | 1..29 | 93 | -> | Plus |
2R | 12351920..12352439 | 30..549 | 100 | -> | Plus |
2R | 12352497..12352671 | 550..724 | 100 | -> | Plus |
2R | 12352734..12352818 | 725..808 | 97 | -> | Plus |
2R | 12353042..12353162 | 809..926 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:27:07 Download gff for
FMO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8240547..8240667 | 809..926 | 97 | -> | Plus |
arm_2R | 8239338..8239366 | 1..29 | 93 | -> | Plus |
arm_2R | 8239425..8239944 | 30..549 | 100 | -> | Plus |
arm_2R | 8240002..8240176 | 550..724 | 100 | -> | Plus |
arm_2R | 8240239..8240323 | 725..808 | 97 | -> | Plus |