Clone FMO10678 Report

Search the DGRC for FMO10678

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:106
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30047-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10678.5prime Sequence

1112 bp (995 high quality bases) assembled on 2011-06-24

> FMO10678.5prime
CAGTCGACATGAAGTCGAGGGAAAAGAATGGGTCTGCGGCTAGTAACTCG
GACGTGGCACTGGTCAATGTTTTATCGCAGCAAAAGCTGAGAAGGCACAG
ATTGCCCTGGTACTACGCACCATCCTTTCTCCTCCTATGGGTGGCTCTAT
TCTACGCAGTGGTATATCCTTTGTACCATCGCCTGCCCGATAGCGTCCTT
ATATCGCATGAATCGAGTAAACCTGGACAATTTGTGGCGGAGAGGGCGCA
AAGGCTGCTCTACAAATACGACAAGATCGGACCCAAGGTGGTGGGCAGTG
TGGCGAATGAGGTGACAACGGTGGCCTTTCTCGAAGAGGAGGTGGAGAAC
ATCCGGGCGGCAATGCGCAGTGATCTCTACGAGCTGCAGCTGGATGTCCA
ACATCCCTCGGGCGCCTACATGCATTGGCAGATGGTGAACATGTACCAGG
GCGTCACGAATGTGGTTGTTAAGATTAGTAGCCGGAGCTCCAATAGTTCA
TCCTACCTGCTGGTGAACAGTCATTTCGATTCCAAGCCCAGCAGTCCTGG
TTCCGGCGACGATGGCACCATGGTTGTGGTCATGCTGGAAGTCCTTCGCC
AGGTGGCCATATCGGACACCCCATTCGAACATCCCATTGTGTTTCTGTTC
AACGGAGCTGAGGAAAATCCTTTGGAGGCATCGCACGGCTTTATTACCCA
ACATAAATGGGCGGGAAACTGCAAAGCTCTCATAAATCTGGAAGTGGCAG
CAGCGGAGGTCGTGACCTGTTGTTCCAGAGTGGACCGAATAATCCGTGGC
TGATCAAGTACTATTACCAGAATGCTAAACATCCGTTTGCCACCACAATG
GCCGAGGAATATTTCAGTCTGGCATTTGCCATCCGATACGGATTTCCGTA
TCTTTCGCGACTACGGACACTGCCAGGCCTTGACATGCGCAAATCAGCAA
TGGCTATGTATACATACCATTTTGATAATGTCAGCCGGTGCCCATGAATC
CCTACAGTTCTGGAGACATGCCTTTATCTCTGGTGCGCTTTCGCTGATGC
GCTGAATGCAATCAAGATCCAAGCGAGAACGCTGTTTCTTGACTATCTGG
ACTTTCTTGGTA

FMO10678.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30047-RA 2809 CG30047-RA 43..1105 3..1052 4920 98.3 Plus
CG30043-RA 3082 CG30043-RA 485..922 432..867 760 78.8 Plus
CG30049-RA 2796 CG30049-RA 141..953 108..917 510 71.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12351920..12352441 30..551 2610 100 Plus
2R 25286936 2R 12352496..12352671 549..724 880 100 Plus
2R 25286936 2R 12353040..12353154 807..919 475 98.3 Plus
2R 25286936 2R 12360157..12360329 552..724 460 84.4 Plus
2R 25286936 2R 12352728..12352818 719..808 375 96.7 Plus
2R 25286936 2R 19377593..19377675 630..712 265 88 Plus
2R 25286936 2R 12353220..12353356 925..1052 215 89.1 Plus
2R 25286936 2R 12367917..12368039 423..545 210 78 Plus
Blast to na_te.dros performed on 2014-11-26 23:37:06 has no hits.

FMO10678.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:53 Download gff for FMO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30047-RA 41..1178 1..1111 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:27:07 Download gff for FMO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30047-RA 41..1178 1..1111 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:46 Download gff for FMO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30047-RA 41..1178 1..1111 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:46 Download gff for FMO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12351833..12351861 1..29 93 -> Plus
2R 12351920..12352439 30..549 100 -> Plus
2R 12352497..12352671 550..724 100 -> Plus
2R 12352734..12352818 725..808 97 -> Plus
2R 12353042..12353162 809..926 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:27:07 Download gff for FMO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8240547..8240667 809..926 97 -> Plus
arm_2R 8239338..8239366 1..29 93 -> Plus
arm_2R 8239425..8239944 30..549 100 -> Plus
arm_2R 8240002..8240176 550..724 100 -> Plus
arm_2R 8240239..8240323 725..808 97 -> Plus