FMO10681.5prime Sequence
1102 bp (1007 high quality bases) assembled on 2011-06-24
> FMO10681.5prime
CACTCGACATGGACAAGATAATGATTTGCATCATTGGGTCGGGAAACTGG
GCCACTACCATAGCCCGCAATGTGGGCAGAAACGTGCTGAATTCGCAGAC
ACTGGACGAAAAGGTGCCCATGTACGTTTATGAGGAAATTGTTGAAGGTC
GCAAGCTCACGGAAATCATCAACACCACCCACATAAATTCCAAGTACATG
CCGAACTTTGAACTGCCGCCAAATATTGTGGCCGTGGATGATATCGTGAC
TACGGCTCGAGATGCGGACATTATAATATTCGCCATTCCGCCGACTTTCG
TGAGTAGCTGCTGCAAGACGCTGCTCGGAAAAGTCAAGCCCACGGCCCAC
GCCGTTTCCCTGATCAAAGGATTCGAGCGCGGCGACGATGGCCAGTTCGT
CCTGATTTCGCAGATTATAATGCGGCAGCTAAAGATTCCCTGCTCCGTCC
TGGTCGGCTGTAACTTGGCCCATGAGCTGGCCCACGACCACTTTGCCGAG
GGCACAGTTGGCTGTCGGGATCAGAAGTATTACAGGGTGCTCCACGACAT
ATTCAAGTCGCCCACTTTCCGCGTGGTGGTCACCGAGGATGCCGACTGTG
TGGAGATCTGTTCCACTCTAAGGAACATCATTGCCTTTGCGGCTGGCTGT
TCCGACGGGATGGAGCTGATGAGAACACCAAGGGAGGCATCATCAGGAGA
GGATTTCTGGAGATGCTTCAGTTCGTCGATGTGTTCTATCCCGGCTGCCG
CATGGGAACCTTTTTTGAGTCGTGCGGAATATCCGATTTGGTTACTAGTT
GTTATGCAAACCGCAATCGCAAGTTGGCCGAAGCTTTTGTGAAGACGGGC
AAACCCTTGAGCGAACTGGAGCACATTCTCATTCCAGGACACGAGCCACT
GGGTCCGGTGACAGCGGAGCTGGTGCATCATTATGCTCAAGAGAATGGCT
TGGAGGACAAATTCCCCCTCTTTACACTGTGTACAGAATCTGCAACTGGA
GACTATCCACTGCAGCGTCTGTTCGAACCTCTTGATTAGCACGCCGAGTA
ATATTTTCCACCCGCTCCAATACTTTCCAAATGCAAGCCTCCTAGACATT
CG
FMO10681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3215-RA | 1209 | CG3215-RA | 66..1143 | 2..1080 | 4930 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23129895..23130124 | 231..2 | 1075 | 97.8 | Minus |
2R | 25286936 | 2R | 23129627..23129833 | 434..228 | 1020 | 99.5 | Minus |
2R | 25286936 | 2R | 23129357..23129547 | 623..433 | 955 | 100 | Minus |
2R | 25286936 | 2R | 23129114..23129298 | 806..623 | 845 | 98.4 | Minus |
2R | 25286936 | 2R | 23128906..23129060 | 960..806 | 665 | 98.1 | Minus |
2R | 25286936 | 2R | 23128773..23128848 | 1032..957 | 225 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:14 has no hits.
FMO10681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:54 Download gff for
FMO10681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3215-RA | 64..1102 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:28:15 Download gff for
FMO10681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3215-RA | 64..1102 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:49 Download gff for
FMO10681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3215-RA | 64..1102 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:49 Download gff for
FMO10681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23129357..23129545 | 435..623 | 100 | <- | Minus |
2R | 23129627..23129833 | 228..434 | 99 | <- | Minus |
2R | 23129899..23130124 | 1..227 | 97 | | Minus |
2R | 23128906..23129059 | 807..960 | 98 | <- | Minus |
2R | 23129114..23129297 | 624..806 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:28:15 Download gff for
FMO10681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19016429..19016582 | 807..960 | 98 | <- | Minus |
arm_2R | 19016637..19016820 | 624..806 | 98 | <- | Minus |
arm_2R | 19016880..19017068 | 435..623 | 100 | <- | Minus |
arm_2R | 19017150..19017356 | 228..434 | 99 | <- | Minus |
arm_2R | 19017422..19017647 | 1..227 | 97 | | Minus |