FMO10683.5prime Sequence
985 bp (931 high quality bases) assembled on 2011-06-24
> FMO10683.5prime
CAGTCGACATGTTGGAACAAGTTGAGCAAAAGAACCAAGAGCAAAAAAAA
CCACAAAAGTTTAACGTTTTTCCGAAAATTATAAATGGCGGCGTCGCCGG
TATTATTGGAGTGGCATGCGTCTATCCACTGGACATGGTTAAGACGCGAC
TGCAAAACCAAACAATAGGTCCCAATGGAGAGCGCATGTACACCAGCATT
GCCGACTGTTTCCGAAAGACTATCGCCAGCGAAGGCTATTTTGGAATGTA
CAGAGGCTCAGCGGTGAACATCGTGCTGATTACGCCCGAGAAAGCCATCA
AGTTGACCGCCAACGACTTCTTTCGGTATCATCTGGCATCCGATGACGGG
GTTATTCCGTTGTCACGGGCTACTTTGGCCGGGGGCCTGGCCGGGCTATT
CCAGATCGTGGTCACCACGCCCATGGAGCTCCTCAAGATACAGATGCAGG
ACGCCGGGCGGGTGGCTGCTGCCGACCGAGCGGCAGGACGAGAGGTGAAA
ACTATAACGGCCTTGGGTCTGACCAAGACGCTCCTTCGTGAGCGTGGAAT
CTTCGGTTTATACAAGGGTGTGGGCGCCACTGGAGTGCGGGACATCACGT
TCTCGATGGTGTACTTTCCGCTAATGGCCTGGATAAATGACCAGGGGCCA
CGCAAGTCAGATGGTTCTGGGGAAGCGGTTTTCTACTGGTCTCTGATAGC
TGGACTCTTGTCTGGCATGACTTCTGCCTTTATGGTCACCCCTTTTTGAT
GTGGTCAAGACTCGACTGCAGGCCGATGGCGAGAAGAAGTTCAAAGGCAT
CATGGACTGTGTAAATAGGACCCTTTAAGGAAGAGGGCATTAAGTGCATT
CTTTAAGGGCGGTCTATGTCGGATAATGGTGCTAGCTCCACTTATTTGGT
ATCGCGCAATGTTCTATTTTTTGGGTGTGGGCGAGAGATTTCTGGGCATC
GAGCGAACGAAATCTGTGCAAGCTTTCTAGACCAT
FMO10683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC2-RB | 1070 | CG12201-RB | 83..1039 | 9..968 | 4560 | 98.8 | Plus |
| GC2-RD | 1086 | CG12201-RD | 83..1055 | 9..968 | 4395 | 97.2 | Plus |
| Tango9-RB | 3673 | CG10007-RB | 1815..2579 | 968..201 | 3615 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11972101..11972865 | 201..968 | 3490 | 98.4 | Plus |
| 3R | 32079331 | 3R | 11971894..11972028 | 65..199 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 11970318..11970554 | 230..466 | 285 | 74.7 | Plus |
| 3R | 32079331 | 3R | 11971776..11971831 | 9..64 | 280 | 100 | Plus |
| 3R | 32079331 | 3R | 11970102..11970229 | 72..199 | 235 | 78.9 | Plus |
Blast to na_te.dros performed 2014-11-26 23:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 3793..3847 | 661..715 | 113 | 67.3 | Plus |
FMO10683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:56 Download gff for
FMO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12201-RB | 83..1048 | 9..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:29:13 Download gff for
FMO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12201-RB | 83..1048 | 9..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:52 Download gff for
FMO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC2-RB | 83..1048 | 9..979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:52 Download gff for
FMO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11971776..11971831 | 9..64 | 100 | -> | Plus |
| 3R | 11971894..11972028 | 65..199 | 100 | -> | Plus |
| 3R | 11972100..11972874 | 200..979 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:29:13 Download gff for
FMO10683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7797498..7797553 | 9..64 | 100 | -> | Plus |
| arm_3R | 7797616..7797750 | 65..199 | 100 | -> | Plus |
| arm_3R | 7797822..7798596 | 200..979 | 97 | | Plus |
