FMO10686.5prime Sequence
1136 bp (995 high quality bases) assembled on 2011-06-24
> FMO10686.5prime
CAGTCGACATGGATTCACAAAGGTCCACGTTGGTCCACTGGTTCCGTAAA
GGACTCCGGTTGCACGACAATCCGGCATTATCGCACATTTTTACCGCCGC
TAACGCTGCTCCAGGAAAATACTTTGTTCGCCCGATTTTCATTTTGGATC
CAGGAATCCTCGATTGGATGCAAGTGGGTGCCAATCGATGGCGATTCCTG
CAGCAAACGCTGGAGGACTTGGATAACCAGCTTCGGAAACTTAATTCCCG
TCTGTTTGTGGTGCGCGGGAAGCCCGCAGAGGTTTTTCCCCGTATTTTTA
AGAGTTGGCGCGTGGAAATGCTAACTTTTGAGACAGATATCGAGCCGTAC
TCCGTGACCCGGGATGCTGCCGTGCAGAAGTTGGCCAAGGCAGAGGGTGT
GAGAGTGGAAACTCATTGCTCCCACACGATTTATAATCCGGAATTAGTAA
TAGCGAAGAATCTTGGCAAGGCTCCAATTACCTATCAAAAGTTCCTGGGC
ATTGTGGAGCAACTAAAGGTACCTAAAGTTCTAGGGGTTCCTGAAAAGCT
TAAAAACATGCCTACACCACCCAAAGATGAGGTGGAGCAAAAGGATTCGG
CGGCCTATGATTGTCCTACGATGAAGCAATTAGTAAAACGCCCGGAGGAA
CTGGGCCCTATTAAGTTTCCGGGAGGCGAAACAGAGGCACTGCGCCGCAT
GGAGGAATCCCTAAAGGATGAAATTTGGGTTTGCCCGCTTTTGAGAAGCC
CAACACGGCACCCAACTCGCTGGAGCCTAGCACTACCGTACTAAGCCCTT
ACCTCAAATTTGGAATGCCTTAGTGCCCGACTGTTCAATCAAAAGCTCAA
GGAAATTATCAACGCCAGCCGAAGCACTCGCACCCGCCCGTTTCGCTCAT
TGGACAACTCATGTGGAGGGAATTTTACTACACAGTGCCGCTGCGGACCC
AATTTCGATCGAATGTTGGGCATGTATACTGCATGCAAATTCGGTGCAGA
GCATCCGAATCACTTGGAAGCCTGAAACACGACGCTCAGGATTTTCCTTT
TCATCGACGCCATCATGCGTTCAGCTGCCCAGGAGGGTTGGATCCATTCA
TTCTGCCCGGCATGCACTGGCCATGTTTCTTTAACG
FMO10686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr6-4-RD | 1989 | CG2488-RD | 73..1196 | 9..1131 | 5025 | 97.4 | Plus |
| phr6-4-RC | 2044 | CG2488-RC | 128..1251 | 9..1131 | 5025 | 97.4 | Plus |
| phr6-4-RB | 2161 | CG2488-RB | 245..1368 | 9..1131 | 5025 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20644663..20645330 | 676..9 | 3325 | 99.9 | Minus |
| 2L | 23513712 | 2L | 20644153..20644602 | 1121..674 | 1315 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:30 has no hits.
FMO10686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:57 Download gff for
FMO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 243..1227 | 9..992 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:30:14 Download gff for
FMO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 245..1229 | 9..992 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:56 Download gff for
FMO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 245..1229 | 9..992 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:56 Download gff for
FMO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20644283..20644600 | 676..992 | 97 | <- | Minus |
| 2L | 20644664..20645330 | 9..675 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:30:14 Download gff for
FMO10686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20644283..20644600 | 676..992 | 97 | <- | Minus |
| arm_2L | 20644664..20645330 | 9..675 | 99 | | Minus |
