FMO10687.5prime Sequence
1089 bp (949 high quality bases) assembled on 2011-06-24
> FMO10687.5prime
CAGTCGACATGATGAATCTGCATCTGAGTGAAATCTTTTGGATCACGCTG
ATCTTGGTCCTCAGCATATGGACTTCAGTTGGGGTCAAAGCCGAGGAAGA
GGAATGTCCTTCAATGGCGGACGCGGGAAGCCTGCAACAGACCCAGCTAA
TCCAGCGATTAACACATGTCTGCCGCTATGATCGACTGGAAAGACCATTT
GAATACGACTCTGATGGAAAACGACTGCCCATTGTGGTGAAGACGCGTAT
TTATGTGTACTTCCTGCAGAACCTCAACTCCGACCTGCTGCAGTTCAAGA
TGCACGCGCTGTTGCAGCTGCGATTTCAGGACAAGCGGCTGGCTTACAAG
GCCTTCAATCGCAGCGACAACATCCTGGGCCAGAAGCACCTGAGCGAACG
CCTCTGGCTGCCGCACATCTTCTTTGCCAACGAACGAGAGTCCAGTATCC
TGGGCACGGACGAGAAGGACGTCCTGACTTCGCTTTCGCCCGAGGGAAAC
GTGATCATCTCCACGCGCATGCAGGCCAGTCTCTACTGCTGGATGAACTT
TCAGAAGTTTCCCTTTGACCAGCAGTTCTGCTCCACGGTCCTGGAGAGCT
GGATGTACAACACTTCCGATTTGATTCTGGAGTGGGAGCCGCACACGCCC
ATCTCCTTTGACCCGGAAATGAGGCTCACTGAGTACAATATGGCCCAGTT
CTGGCACAACACTACGATTGTGCAGTCGGATGGGGACAATCTGCGGCATG
AGCTTTTGCTGGTAACTATAGTTCGCTGAGCTTTACGGTCAATCTGAAGC
GAGAAATTGGCTTCTATTTGCTCGACTATTACCTGCCCTCCATGATGATC
GTGGCCATCTCTTGGTGTCCTTCTGGCTTCAGCGACGCATCTCTCCAAGA
TTATGCTGGGAACCAGCACCATGTTGTCGTTCATCACGCTTTCTCATCGC
AGAGCAGACTGCCCATGTGAGCTACATAAAGGTGTCGAGGTGTGCTCTGG
GCTGCACCTTCTTCATTTTCGGCAGCCTGTGGAGTTTGCTTTGTCAATCA
TTTGGCGCCGCAGAAACATGACTGATAGTCAACGCAGTA
FMO10687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7589-RB | 2249 | CG7589-RB | 579..1652 | 7..1062 | 4890 | 98 | Plus |
| CG7589-RA | 1950 | CG7589-RA | 280..1353 | 7..1062 | 4890 | 98 | Plus |
| CG6927-RA | 1868 | CG6927-RA | 429..663 | 376..610 | 290 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17472608..17473008 | 201..601 | 2005 | 100 | Plus |
| 3L | 28110227 | 3L | 17473077..17473226 | 601..750 | 750 | 100 | Plus |
| 3L | 28110227 | 3L | 17472429..17472548 | 82..201 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 17473290..17473415 | 758..882 | 580 | 99.2 | Plus |
| 3L | 28110227 | 3L | 17470705..17470781 | 7..83 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 17473691..17473830 | 909..1039 | 280 | 90 | Plus |
| X | 23542271 | X | 4907468..4907616 | 462..610 | 235 | 77.2 | Plus |
| 3R | 32079331 | 3R | 31303774..31303839 | 575..510 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:37:37 has no hits.
FMO10687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:57 Download gff for
FMO10687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7589-RA | 274..1371 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:30:46 Download gff for
FMO10687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7589-RA | 274..1371 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:58 Download gff for
FMO10687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7589-RA | 274..1371 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:58 Download gff for
FMO10687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17470699..17470780 | 1..82 | 96 | -> | Plus |
| 3L | 17472430..17472548 | 83..201 | 100 | -> | Plus |
| 3L | 17472609..17473007 | 202..600 | 100 | -> | Plus |
| 3L | 17473077..17473235 | 601..758 | 99 | -> | Plus |
| 3L | 17473291..17473446 | 759..909 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:30:46 Download gff for
FMO10687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17463799..17463880 | 1..82 | 96 | -> | Plus |
| arm_3L | 17465530..17465648 | 83..201 | 100 | -> | Plus |
| arm_3L | 17465709..17466107 | 202..600 | 100 | -> | Plus |
| arm_3L | 17466177..17466335 | 601..758 | 99 | -> | Plus |
| arm_3L | 17466391..17466546 | 759..909 | 96 | -> | Plus |
