FMO10696.5prime Sequence
1087 bp (884 high quality bases) assembled on 2011-06-24
> FMO10696.5prime
ACAGTCGGAGCCTCTGGCCGCGGTCAAGTCGAAATCCATGCGATCCCGGA
AGAGACGACAGCGTCGTAGGCGACAAATAGCCTACCTGGCCATATGTGGA
TTAAGTGTAGCCATATTCGGCTTCGCTTTGGCCACGCTGATCCGGCCCAC
AACCGCCCAGGCTGATGCAGATCCCGGGAGCTGGCGCAAGGGATATGTGG
GCCATGGCACCACGCACGAACAGCTTGGCCAGCCCCATTGGCCACCAGTC
CAGTACACTGTATACCGGCCGACAACCAACTACACAAAGGCACCACCACC
TCCCACGTCCGCCATGAACCCCATTTTCAATTTTACACACTTTCTATATG
ACAAGGTTCTTTATAGGGATGAACCCATTCCGGAGGGTTACATTGTCGTA
AAGAATTCGGACACTTTGAGCTTGGGTCCCAAAGTGGAGGAGAATGACTG
GCGGGATCTATTGGCTCATTATTGGATGGTTCTCATCTGGGTTGTTATTC
TCGTGGTGCTCATTATAGTCATACCGTTCATTGCCGTTTGCTATTGCTGT
TTCTGTTGCTGCCGACGATGTCGACAGGGATGTCCTCCGTGTACCAGTAA
ACAGGATGCTCAGCGGCGCTTCTGTTGTGGCATCTGTCTGTTTGATCCTC
ATCATCGGACTGATTTTTGGCATCATTATCGCCTTTGTTACCAACAAAAT
GATTGACAGCGGCTTTGCCGAGACTTCCGAGACAATGAAGCGCGGCAGCG
AGGACACTTGCACTTATCTGAAAGATGTAGCCTGATCACGTTCACCATCT
GATGATGTACAACTACGAGAGATGGAGACTCATGTGCTTGATCAATTAAC
CCACGCTCACCGGCACATATTTTGGATCTCTCCGACCCATCGGAGAGTAA
TTCCCTTGGCAGAAATGGAACGAGTTTTGGAGAACATGCCCGAGGCTCCT
GGAGCTGATGATGCCAAGTGGAGAAGATGGAAAAAGATCTGCGCCTTCTA
GGCTCCCAATTAGAGAATGGCGTCGGTGGCATAACCGAAATGTCAACTTG
CAATGCCAATTCTGTCACTGCAATGTGCCCAAGTCTC
FMO10696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prominin-like-RG | 4046 | CG7740-RG | 498..1578 | 1..1079 | 4860 | 97.5 | Plus |
| prominin-like-RF | 3442 | CG7740-RF | 379..1459 | 1..1079 | 4860 | 97.5 | Plus |
| prominin-like-RE | 3491 | CG7740-RE | 296..1376 | 1..1079 | 4860 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3120666..3121047 | 388..7 | 1910 | 100 | Minus |
| 3L | 28110227 | 3L | 3120027..3120214 | 852..665 | 830 | 98.4 | Minus |
| 3L | 28110227 | 3L | 3120459..3120607 | 534..386 | 745 | 100 | Minus |
| 3L | 28110227 | 3L | 3120272..3120400 | 664..535 | 600 | 99.2 | Minus |
| 3L | 28110227 | 3L | 3119806..3119963 | 1012..853 | 470 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:43:16 has no hits.
FMO10696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:44 Download gff for
FMO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RA | 498..1532 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:36 Download gff for
FMO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RE | 296..1330 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:08 Download gff for
FMO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RE | 296..1330 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:08 Download gff for
FMO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3119799..3119963 | 853..1019 | 92 | <- | Minus |
| 3L | 3120027..3120214 | 665..852 | 98 | <- | Minus |
| 3L | 3120272..3120400 | 535..664 | 99 | <- | Minus |
| 3L | 3120459..3120606 | 387..534 | 100 | <- | Minus |
| 3L | 3120668..3121052 | 1..386 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:36 Download gff for
FMO10696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3119799..3119963 | 853..1019 | 92 | <- | Minus |
| arm_3L | 3120027..3120214 | 665..852 | 98 | <- | Minus |
| arm_3L | 3120272..3120400 | 535..664 | 99 | <- | Minus |
| arm_3L | 3120459..3120606 | 387..534 | 100 | <- | Minus |
| arm_3L | 3120668..3121052 | 1..386 | 99 | | Minus |
