FMO10701.5prime Sequence
1138 bp (1013 high quality bases) assembled on 2011-11-14
> FMO10701.5prime
CAGTCGACATGGCCGTCAGCTTCGAGAAGAATCGGGCGCAAATAGTGGCC
GCCTGGAAGGATGTGCTGGACGATAAGAGCGACACGAACTGGTCCCTCTT
TGGCTACGAGGGTCAGACCAACGAGCTGAAGGTGGTGGCCACCGGCGATG
GCGGCGTGGATGAGCTAAACGAAGACCTAAATAGCGGCAAGATTATGTAC
GCCTTCGTCCGAATCGAAGACCCCAAAACGGGCCTCAACAAGTACTTGCT
CATCAACTGGCAGGGCGAGGGCGCACCTGTTCTACGCAAGGGTACCTGCG
CCAACCACATACGTGATGTGAGTAATTTGCTGTCCGGCGCTCACCTTACC
ATCAATGCCCGGAACGAGGACGATATTGACTTGGATCGGCTTCTCAAGAA
GCTGAGCACCGTGAGCTCAGCCTACAGCTTTAAGGAACCTCGAGGCGCCA
TGGAGGAGCAGAAGGCGCCGGTGGGAACCAACTATACTCGGGTCATTCCC
ACCAAGGAGTTAAACGCCAGCGTTATGCAGGACTTCTGGAAAAAGGAGGA
GGCCGAGGAGAAATTGCGACAGGAGGCAGAGAAGGAATCCAAGCGGCTTG
AGCTTCAAAAGTTGGAGCAGGAGCAACGTAGTCGCGAGGAGAAGGAGCAC
AAGGAGCGGGAGAAGTTGGTCATAAGCACCACCAAGCTCCAGCCGGCCCA
CGTACCCATCAAAACGTCACCGCAACCTTTGAGCCCTGAGAAACTGCACC
AGGATTTGCCAACAATCTGACCGATGCGGAGCGCATGCGTCAGGCGAGGA
ACCAGGAGGCCCGCGAATTGATTGGCTCTCGTGTGGGTGCTGCCAAGGCC
ATGTTTACAAAGCACACGAGCGAGGGACAACTTCAGTCTAAACTAATACG
CAACCGCCGGCCAAACCAGCTCGCAACCTCGATTGCCCAGCGCATTCACG
TTTTCAACCAAACCAGCCTCAGGATGCACTGTTGCCCTCAACCACCACGC
GCTGCGTTCCCCTGCCAAACGGTTTGCTGTTAAATGCCTCCGAACCAGTA
GTCCCCCGCCTCCAGCTATAAGCTCCTGCCTGCTTCCGGAGCCTGGCCGA
AGGTGTGTTTCCACAATACGGGAGGGTGGAGGAATCCC
FMO10701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abp1-RA | 2500 | CG10083-RA | 424..1538 | 9..1133 | 4955 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13485087..13485543 | 717..261 | 2285 | 100 | Minus |
| 3L | 28110227 | 3L | 13485602..13485857 | 264..9 | 1280 | 100 | Minus |
| 3L | 28110227 | 3L | 13484851..13485027 | 891..716 | 835 | 99.4 | Minus |
| 3L | 28110227 | 3L | 13484626..13484784 | 1056..895 | 355 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:12 has no hits.
FMO10701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:00 Download gff for
FMO10701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10083-RA | 442..1561 | 9..1138 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:33 Download gff for
FMO10701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abp1-RA | 424..1543 | 9..1138 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:41 Download gff for
FMO10701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abp1-RA | 424..1543 | 9..1138 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:41 Download gff for
FMO10701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13485603..13485857 | 9..263 | 100 | | Minus |
| 3L | 13484851..13485027 | 716..891 | 99 | <- | Minus |
| 3L | 13485089..13485540 | 264..715 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:33 Download gff for
FMO10701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13477951..13478127 | 716..891 | 99 | <- | Minus |
| arm_3L | 13478189..13478640 | 264..715 | 100 | <- | Minus |
| arm_3L | 13478703..13478957 | 9..263 | 100 | | Minus |
