Clone FMO10707 Report

Search the DGRC for FMO10707

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:107
Well:7
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3394-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10707.5prime Sequence

1121 bp (984 high quality bases) assembled on 2011-11-14

> FMO10707.5prime
CAGTCGACATGGAGATCCTGCTGGAACTAAACCTAAAGCAGAAGCTGGCC
ACCCGACTAGGCACCATCCTGCTGGCCACAGTGATCTTCGGCGCCTTTTG
CTGGGACAACGCGTTGGCCAGTCTAACACTGGGAGCAGTGGTGGCTCTCC
TGCTCAGAAATCCCACCTTCGTCTTTGCCTTGGTAATGACCGCGTCCAGG
GACCTAAAGGCTTTCCAGCGATTCGTGGCCCTCAACATCTACCTGCTAAG
AAAGGATCGCGGCGGATTCACTGTGGCCCGCTGTTTCCAGGACCAGGCCA
GACGCCGCCCCAAAAAGACATGCTTCGTGATGGACGATCGCCATTTAAGC
TTTGCAGAGGCTCTGGAGTTTAGCCAAAAGATAGCTGGATATTTTAGCGA
TCGCGGCCTGGAGAGGGGCGACTGTGTGGCCCTACTAATGGAAACGCGTC
TGGAGTATCCCTGCATTTGGTTGGGTCTCTCCCAGCTCGGGGTAATCACA
GCCCTTATTAACTCCAATCTGCGCGGGGAGTCTCTGCTGCACTCCATCAA
AGTGGCCAATGCCAAGGCCCTAATTGTGGGCAGTGAACTCCTGGATGTGC
TGGTATCACTTAGGGAGAAGGAGCAGTTGGACGAGGTGCCCATCTATCAG
TACACAGATGACGAGGTTCGCGGGGTGGCTGGACATGATCTTTTGCCAGG
AGCTGTGGACTTGGTTACTGCTCTAAAGACCCAAAAGAAACTGGAGCTAC
CGAGTGCTGTCTGTCCTGTAGAAGCTCGTTCCAAATTGCTCTACGTTTAC
ACCTCTGGAACTACGGGCTTGCCCAAGCAGCTGTGATCACCAACCTGCGG
TTCCTCTTCATGTCTGCAGGATCCTACTACATGCTCAGATGTCCAGCGAC
GATGTGGTGTACGATCCCCTTCCCCTCTACCAACACCGCTGGTGATTGTG
GGAGTGGGCAATGCATCCTCATGGATCCACCGTTGTGCTGCCGCAAAAGT
TCTTCGGCCAGGACTTCTGCCTTGACCTTGCGATCCGCCAACACTGCCAC
TGTTGGCCCAATAAATCGGGGGAGCTGTGTCGCTATCTTCGCCACCCTCC
TACTCCCCCCGATTCGCGAAG

FMO10707.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3394-RB 2357 CG3394-RB 252..1352 9..1109 4965 97.5 Plus
CG3394-RA 2308 CG3394-RA 203..1303 9..1109 4965 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24295908..24296730 209..1026 3610 97.6 Plus
2R 25286936 2R 24295650..24295850 9..209 1005 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:22:01 has no hits.

FMO10707.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:04 Download gff for FMO10707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3394-RB 126..1091 1..964 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:56 Download gff for FMO10707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3394-RA 196..1161 1..964 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:02 Download gff for FMO10707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3394-RA 196..1161 1..964 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:02 Download gff for FMO10707.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24295643..24295849 1..208 98 -> Plus
2R 24295908..24296666 209..964 99 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:56 Download gff for FMO10707.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20183166..20183372 1..208 98 -> Plus
arm_2R 20183431..20184189 209..964 99 == Plus