FMO10708.5prime Sequence
1113 bp (1010 high quality bases) assembled on 2011-11-14
> FMO10708.5prime
CAGTCGACATGGATCGCTACGACATGGAGGACGTCGTTGTGGCGCCCCCT
GCCGAGTGCAGTTCGCCGCTCAAGGAGTGGCGCCTCAAGCGCCAGGCGGG
CACACTAGACCGCTCCGATATCATCGAGTTCTTAAAGCGCGAGTCTCCCA
AGTATTTTGATTACCAGACTAGCGCTACAGTTAAAGATACCAATGTGATT
ACTCTAAAGTGCATGTTTAAGGAGTCGCTGGCCAAGGAGGAGATCATCGA
TGTCGTTGTGGAGTTTATGCTGGGCGACAATCCTTCCTCCGCACTGGAGA
AGCTCCGACTGGAGGGCAACACGGCCACCGTCTGTGGCAAGGTCTTTAAG
AACGGGGAGCCCACCTACAGCTGCCGCGAGTGCGGCGTCGATCCCACCTG
CGTGCTTTGCGTCAACTGTTTCAAGCGCTCGGCGCATCGCTTTCACAAGT
ACAAGATGTCCACTTCCGGCGGCGGCGGCTGCTGTGACTGCGGAGACGAC
GAGGCCTGGAAGAAGGATCAGTACTGCGAGCTGCATCTGGCAAATCGCAA
GAATCCGCTGGAGAGCAAGATCCTGACCGACGCAGTACTTGAGCGGGTTG
AGATCTGCTTTGGGGCAATCCTCGCCTTCTGCGTGAGTTATCTGGAAATC
GAGCCAAACGCCAGTCTACAGTGCCTGGATGGAAACGTGGAAGGCGGCCA
AGTGGACGGAGCGCAGTATTGCACTGTGCTCTACAACGACGAGTCGCACA
CGTTCGACCAAGTCATTCAGACGCTGACCAAAATTGCCAAGTGTCGGGCA
AAGGACGCCATGGAAATCGTGGCGGCAATTGATCGCGAGGGACGAGCGGT
GGTCAAATGCGATACATTTGAGGAGTGCAACAAACTAAGGTATCCATCGA
GAACCAAATGATTCTGCCGACCTCCCTGGTGTCGACGGCACGCACAATCA
GTCACTCAGAAATCGTGCTGCACATCGGGGCCGTGGCCTGTCAGCAGTTT
GCCCTGCAGCTCCCCGCTGGTTCCAGGAGTTCCTGGTGCGAACCTACTCT
TCGAGAACGTTCCTCGAGTGGTGCACGCAGCAGGAACCTCTGGATTCGGC
CAATCCTGATACG
FMO10708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9086-RC | 7096 | CG9086-RC | 360..1447 | 9..1085 | 5040 | 98.2 | Plus |
| CG9086-RB | 6241 | CG9086-RB | 218..1305 | 9..1085 | 5040 | 98.2 | Plus |
| CG9086-RA | 6383 | CG9086-RA | 360..1447 | 9..1085 | 5040 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16962931..16963266 | 540..205 | 1680 | 100 | Minus |
| X | 23542271 | X | 16962492..16962826 | 873..539 | 1675 | 100 | Minus |
| X | 23542271 | X | 16967495..16967672 | 186..9 | 890 | 100 | Minus |
| X | 23542271 | X | 16962255..16962434 | 1041..867 | 590 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:22:08 has no hits.
FMO10708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:04 Download gff for
FMO10708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 322..1384 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:02 Download gff for
FMO10708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 352..1414 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:04 Download gff for
FMO10708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 352..1414 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:04 Download gff for
FMO10708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16962493..16962825 | 540..872 | 100 | <- | Minus |
| X | 16962238..16962428 | 873..1057 | 93 | <- | Minus |
| X | 16962932..16963266 | 205..539 | 100 | <- | Minus |
| X | 16963703..16963720 | 187..204 | 100 | <- | Minus |
| X | 16967495..16967677 | 1..186 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:02 Download gff for
FMO10708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16861528..16861710 | 1..186 | 97 | | Minus |
| arm_X | 16856271..16856461 | 873..1057 | 93 | <- | Minus |
| arm_X | 16856526..16856858 | 540..872 | 100 | <- | Minus |
| arm_X | 16856965..16857299 | 205..539 | 100 | <- | Minus |
| arm_X | 16857736..16857753 | 187..204 | 100 | <- | Minus |
