FMO10717.5prime Sequence
1120 bp (997 high quality bases) assembled on 2011-11-14
> FMO10717.5prime
CAGTCGACATGGGTAGTATCTATGGGCTTCTGCCGCTGCTTCTGCTTTTG
TGTCGCCTCCACGACGGCGGATCAAAGTTCGTTAGTCCTACGCGACACAC
CGATCTCAGCAGCACCATTATCATTGTGGAGGACGCCAAAGCCTGTTTCC
GACGAGTCCTGGCCGGAAAACGGATAGCACCACACTTCGTGCGCCGCTCC
ATATCCTGCGAGCGGGTGGAGGAGTGCATGCGGGAGTGTGGTCGGGAGCG
GCGTTTCATGTGCGAAGGCTTCAACTATAGGCTGGATCCCTCGGGTCACG
GGCAAGGCGACTGCGAGCTGGTCGAGATGCCACTGGCCCAGATGGACCTG
TACTCCAGTCCGGATCGACGTGATGCCAATTTGCTGAGGCATCCCGACTA
CGATTACTACGAGAGGGACCGCAATGCGCCGAGCAGCTGTCGCCGCAGCG
CTTGCCAGGATTGTTCCAAGGGTCCGGTTAGCAGTCAGCCTGTTTACTTC
AAGCCGAGTGGGGGAGCAGGGGGATATGGCGACCGTGACCGGGATCGGGA
CAGAGACAGGGATCACTATCGTCCGCATAGCAACACGGCCGTGGACCATT
ATCGTGGTCCATCTGGTCCTCCGGGCTCCTCCTCTTACGAACACCGACCT
CCCTACTCCTCCGAGTTCCATGGATCGCACAGCTCATCCTCCTCGGCATC
CTCCTATGAATTCTCCTCGCATGGCTCGGGATCTAGCTCGGGTTCCAGTT
CCGGATACTTTGGTCACACCCCACCCAGTAGCTATGGCGGCGACCATCCC
TACGTGGATCGCCATGACTCTCCGCATTATCGCCCCCGGAAGACCCGGAT
CGTTGGGAAACTTTTGCCGAGTAGCTCCCGGTTACGATAGCTCCGCGTAC
AGGCCGCCCACGTCTGGAAACGGATCACATCGACAAGTTACCGTCCACCG
TATCGTCCTGGGTCGGATTATCTGTCCTATCGAACCACCAAGTCGCCCGG
TCGCATACTACCTCGATGGCGATGGAAGCAGACCTCCAGGGTTCTCTGGG
GTCCACAAAGCAAATAAATTTGTTTCCCTATTGATATGGCGCGAGACAGA
TGGGGACTCAACGGTGTTGA
FMO10717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42326-RD | 3400 | CG42326-RD | 235..1339 | 9..1116 | 4830 | 96.8 | Plus |
CG42326-RE | 5244 | CG42326-RE | 2208..3183 | 138..1116 | 4185 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8576496..8577389 | 1040..140 | 3870 | 97.1 | Minus |
2R | 25286936 | 2R | 8578125..8578257 | 141..9 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:23:12 has no hits.
FMO10717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:09 Download gff for
FMO10717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42326-RD | 230..1272 | 9..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:30 Download gff for
FMO10717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42326-RD | 235..1277 | 9..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:27 Download gff for
FMO10717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42326-RD | 235..1277 | 9..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:27 Download gff for
FMO10717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8576525..8577387 | 142..1011 | 98 | <- | Minus |
2R | 8578125..8578257 | 9..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:30 Download gff for
FMO10717.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4464030..4464892 | 142..1011 | 98 | <- | Minus |
arm_2R | 4465630..4465762 | 9..141 | 100 | | Minus |