FMO10718.5prime Sequence
1079 bp (954 high quality bases) assembled on 2011-11-14
> FMO10718.5prime
CAGTCGACATGAAGTCGACGCGGACTGCACTTGGAGTGGCCCTGCTCCTG
GCCCTGGTGTCTCAACTGGCGGCCCACAGCTCGGATGACTTGGTTTACGG
CTACGAGTGCCGCAGTGGCTACTGCCAGAAGGTAGAGCTCAGCGAGGAGA
ACTACGTCAAGGCCATCAGTCTGCCCGTGTGCCGGCTCTTCTGCGGCAGC
TCCATCGGCACCTTGTGGCCCAAACCGACGGGCACTGTGCGTCTGGACAC
GTTGATGCGCCAAGTGGACATCTCCTTCATTGATTTCAATTTCAATGGAA
TTGCCCGCCAGCAGAAGCTATGGCGAGCGGTTGAAGACCGTTTCATGAAC
ATGCTCGAAGCCCAGATTCCGGATCGCAAGGTTCTGGCACGAGGTGGCTA
CCGTATGTCTGTGAACATCAATACTCCGGATGAGCCGACACCGGCCAGAC
TCACCCTGGATACGGATGAGAGCTATACGCTGGACATTGATACGGATGCC
TCGGGTCATGTGCTGGCCAACATAACCGCGTCCAACTTCTTTGGAGCCCG
TCATGGCCTGGAGACACTAGCCCAGTTGATTGTCTACGATGACATCCGCC
GCGAGGTTCAGGTGACTGCCAATGCCACCATCAACGATGCTCCCGTGTAC
AAATGGCGTGGATTGCTCCTGGACACCTCCGTAACTACTACTCTGTGAAG
TCCATCAAGAGGACGTTGGAGGGCATGGCCTTGGTCAAACTGAACACCTT
CCACTGGCACATCACGGACTCGCACAGCTTCCCATTGGAGGTGAAGAAGC
GTCCGGAGCTGCACAAGCTGGGAGCCTATTCCCAACGGCAGGTGTACCCC
CCTTCGGGAAGTGGCCGAGGTTGTGGAGTACGGCCGCGTGCGAAGCATCC
GTGTTATGCCAGAGTTCGATGCCCCTGCCCATGTGGGGTGAGGGCTGGCA
GCACAGAACATGACCGCCTGCTTCAATGCCCAGCCATGAAGTCGTCCTGC
GTTGGAGCACGTGTGCCACTCGATCCCACTTGTGAACGAATGTCATGGTG
CTGGAGAGACTTACTGGCACATGTCGATC
FMO10718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hexo1-RF | 2113 | CG1318-RF | 147..1185 | 5..1040 | 4850 | 98.4 | Plus |
| Hexo1-RE | 2069 | CG1318-RE | 103..1141 | 5..1040 | 4850 | 98.4 | Plus |
| Hexo1-RD | 2211 | CG1318-RD | 245..1283 | 5..1040 | 4850 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4289246..4289880 | 86..719 | 3125 | 99.8 | Plus |
| 3L | 28110227 | 3L | 4289960..4290245 | 719..1004 | 1165 | 96.9 | Plus |
| 3L | 28110227 | 3L | 4289091..4289171 | 5..85 | 390 | 98.8 | Plus |
| 2R | 25286936 | 2R | 12489611..12489692 | 765..684 | 185 | 81.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:23:20 has no hits.
FMO10718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:09 Download gff for
FMO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RD | 240..1300 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:34 Download gff for
FMO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RD | 241..1301 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:31 Download gff for
FMO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RD | 241..1301 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:31 Download gff for
FMO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4289961..4290301 | 720..1056 | 94 | | Plus |
| 3L | 4289087..4289171 | 1..85 | 95 | -> | Plus |
| 3L | 4289246..4289880 | 86..719 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:34 Download gff for
FMO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4289961..4290301 | 720..1056 | 94 | | Plus |
| arm_3L | 4289087..4289171 | 1..85 | 95 | -> | Plus |
| arm_3L | 4289246..4289880 | 86..719 | 99 | -> | Plus |
