FMO10722.5prime Sequence
843 bp (843 high quality bases) assembled on 2011-11-14
> FMO10722.5prime
CAGTCGACATGGCCGCCACTACCACAACAACAACCACAACACTAGCAACA
ACCACCGGCAATAGCAGCTCCACAAACAACAGCAGCAGCAACAACAACAA
CAGCATCGCCAGCAGTCACAACAACAACAACAACATTGTTACCGTACACA
CCGTACTGAACAACCCACCCACCAATACTGCAGGCGGTGGTGTTGCCGAC
GCCGCCACCGTTGCCATTGCCAAGGACATGTTGCAGCTGCATCATGGCGC
AGCAGCAGCAGCAACAGCGGCGCTGAATAACTACAACAATAGCAGCAACA
ATAACAACAACAGCGCCGATCAGCTGACCGGCAACAGCAACAATTCAGCA
AACCACCCACCTGCCACCAGTAGCACCACCAACTCCTCCTCATCCTCCAC
CACCTCCGCCAACACCAACAACCCCTCTGCCAATGCGGCATCGACATTAA
CATCATCTTCCCCGCCATATGGAGAACTACGCTTCAATCAGGAGGTACTG
CCCATCACGGATGCCGTGACAGTAATCGGACGCAACTCGTCCACGTCGCT
GGTTCACTTCAACGTTGCCGAGAACAACCTTGTGTCGCGCAAACACTTTC
AGGTGCTCTACGATGTGGAGCTGCGAGCCTTCTTTGTCCAGTGCCTAAGC
AAGAATGGCATCTTTGTGGATGATTTCCTGCAGCGCCGCAATGTGGATCC
ACTTCGTTTGCCGCAGCGCTGCTACTTCCGCTTCCCGAGCACGGAGATTC
GTATCGAGTTCGAGAGCTATGTGCCCGCCACTTCATCGGATGCAATTGAC
GGTCATTCGCCATCGTTAGTCGTTGGTGGTGGTGGTGGAGTAG
FMO10722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd68A-RP | 3278 | CG11799-RP | 226..1060 | 9..843 | 4175 | 100 | Plus |
| fd68A-RO | 3379 | CG11799-RO | 226..1060 | 9..843 | 4175 | 100 | Plus |
| fd68A-RN | 3382 | CG11799-RN | 226..1060 | 9..843 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11117305..11118014 | 718..9 | 3550 | 100 | Minus |
| 3L | 28110227 | 3L | 11117045..11117170 | 843..718 | 630 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2505 | 249..457 | 275 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6941 | 250..442 | 262 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6945 | 233..395 | 229 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2529 | 250..457 | 218 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6896 | 279..457 | 210 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6946 | 251..490 | 200 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1593 | 279..355 | 145 | 70.5 | Plus |
FMO10722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:05 Download gff for
FMO10722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RI | 98..938 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:11 Download gff for
FMO10722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RN | 212..1052 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:13 Download gff for
FMO10722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd68A-RN | 220..1060 | 1..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:13 Download gff for
FMO10722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11117045..11117169 | 719..843 | 100 | <- | Minus |
| 3L | 11117305..11118020 | 1..718 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:11 Download gff for
FMO10722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11110145..11110269 | 719..843 | 100 | <- | Minus |
| arm_3L | 11110405..11111120 | 1..718 | 99 | | Minus |
