FMO10724.5prime Sequence
460 bp (297 high quality bases) assembled on 2011-11-14
> FMO10724.5prime
CAGTCGACATGTCAAAGAATAACGGAAAGGGCGCCAAAGGCGAATTCGAA
TTCCCGCAGCCAGCGAAGAAGCAAACCTTCTCGGAAATGATCTACAATCC
CCAGGAAGGCACCTTCTTCGGACGCACCGGAAAAAGTTGGAGTCAGCTAC
TGCTGTTCTACACAATCTTCTACATCGTTCTGGCCGCCCTCTTCACCATT
TTGCATGCAGGGTCTTCTGTCCACCATCAGCGATACGGAACCCAAGGGGA
AAGCTGCAAGACTCGCTGATAGGCACCAATCCCCGGCCCTGGGATTCCGT
CCATTGATTGAGCAAACCGAGCGAAGGATCGGTGATCCCCTCCATGGGCA
AAAACCGCCCAAAACCGATTACTGAATCCAGCTGATTGTGACTTCCTCCG
GGAACTCCACCCCCCCAGGGACGGGATATAAACACTGGGGCTTCGGTTAG
TTCTTCGACC
FMO10724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv1-RB | 1926 | CG9258-RB | 448..896 | 9..458 | 1670 | 93 | Plus |
| nrv1-RA | 2195 | CG9258-RA | 448..896 | 9..458 | 1670 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6780032..6780289 | 402..142 | 775 | 91.6 | Minus |
| 2L | 23513712 | 2L | 6786280..6786414 | 143..9 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:22:46 has no hits.
FMO10724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:07 Download gff for
FMO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv1-RA | 436..886 | 1..453 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:18 Download gff for
FMO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv1-RA | 441..891 | 1..453 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:19 Download gff for
FMO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv1-RA | 441..891 | 1..453 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:19 Download gff for
FMO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6780032..6780289 | 142..402 | 92 | <- | Minus |
| 2L | 6786282..6786418 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:18 Download gff for
FMO10724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6780032..6780289 | 142..402 | 92 | <- | Minus |
| arm_2L | 6786282..6786418 | 1..141 | 97 | | Minus |
