Clone FMO10727 Report

Search the DGRC for FMO10727

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:107
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG40178-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10727.5prime Sequence

1080 bp (979 high quality bases) assembled on 2011-11-14

> FMO10727.5prime
CAGTCGACATGATTTCATGCTTAATTAGTAATTATATTATAACCATTCTG
GTCCTGTGTACAACATCCTATATACACGTTTGTTCGTCGTTAAATGACCC
ATACGCTATATTGGGAATAAACAAAAAGGCAACTACATACGAAATAAGAG
AAGCTTACAAGGAATTAGCTAAGAAATGGCATCCTGATAAAGTTAAAAAT
GATTACGGTGCCGAAAAGTTCATACAAATTAAACTAGCTTATGAAATTCT
AGCTGACTTGGATCGACGACGAATTTTTGACCGGTATGGAGTATCGGATA
TTAACTCACAGTATTTTCAGAAGAAACATGATTATAGTGAATATAATCGC
TTTACATTAAATCAGAATGATGATGATTTTGGACAACGATTCGATATAAA
ACAAGACATTGCATTTTATCAGAAGTTATCAATAACAGAAAATTACTTTG
AGAAAATGATTTTATCAAAAAATGCAAAAAAAGTGCACGTCGTCATGTTT
TACAATGATTGGTGTTTTAAATGTACTCGAATTGTTGATGCCTTCAAAAA
GATTCTTGAACTACTTCAGCCAATAGGTATTAACTTTGCAACGGTTAATG
CAGTGCATGAAGAGTCCGTTTTTCGAAAATGTGGCGCCAGAGAAGTGCCA
CAACTGGTTTTGATTTTAGACAATCAGTATTTCTTATATCGCGATCATAG
CTTTACCCCACAAAAAGTTGTTGAATTTATACGCAAAAAAATACCATTTA
ATGTTTTCAAACGCATCGAACATGACAATTTCAATGATTTTCTGGGAGGA
TGGAGTGACAACAGAGCAAGGGCTTTAATTTTTGAGCCTCGAAGTTTAAC
TACGTTACGATACCTTCTAACCGCCTTTGAATTTACGACCGAGTGCATTT
GGATTTGTGATACGATTAGTAAAGATTCAGCAATATATAACTCGGTTTAA
GGTCATACAGCCTAGAATACACCTTATTTTATCATGGAGATACGACGACC
TTTACAGCCATGTTTGTATTGGAAGAATCCCATCCCAATCTCTGTGATAT
GCTTCACTATCAATCTGCATCTCGGAATTC

FMO10727.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG40178-RC 2984 CG40178-RC 559..1590 9..1032 4760 98.2 Plus
CG40178-RA 2558 CG40178-RA 133..1164 9..1032 4760 98.2 Plus
CG40178-RB 2619 CG40178-RB 194..1225 9..1032 4760 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 25969225..25969628 581..178 2020 100 Minus
3L 28110227 3L 26165233..26165635 178..581 1955 99.5 Plus
3L 28110227 3L 25977966..25978136 179..9 855 100 Minus
3L 28110227 3L 25961369..25961541 894..723 800 98.8 Minus
3L 28110227 3L 26169489..26169661 9..181 760 96 Plus
3L 28110227 3L 25969034..25969182 723..575 745 100 Minus
3L 28110227 3L 26178612..26178783 723..894 735 97.7 Plus
3L 28110227 3L 26219982..26220153 9..179 705 95.3 Plus
3L 28110227 3L 26165678..26165826 575..723 700 98 Plus
3L 28110227 3L 26213849..26214020 9..179 690 94.8 Plus
Blast to na_te.dros performed on 2014-11-27 20:24:32 has no hits.

FMO10727.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:14 Download gff for FMO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40178-RA 133..1164 9..1032 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:06 Download gff for FMO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40178-RB 194..1225 9..1032 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:01 Download gff for FMO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40178-RB 194..1225 9..1032 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:01 Download gff for FMO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 25977967..25978136 9..178 100   Minus
3L 25961360..25961540 724..902 98 <- Minus
3L 25969034..25969180 577..723 100 <- Minus
3L 25969230..25969627 179..576 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:06 Download gff for FMO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 1360666..1360835 9..178 100   Minus
3LHet 1344059..1344239 724..902 98 <- Minus
3LHet 1351733..1351879 577..723 100 <- Minus
3LHet 1351929..1352326 179..576 100 <- Minus