FMO10728.5prime Sequence
1119 bp (993 high quality bases) assembled on 2011-11-14
> FMO10728.5prime
CAGTCGACATGAAGGAGAACAACAAGATCCTCCAACTCATCTATGTGGCG
TGGCGCGAGCGCTGGACGGACTCCCAGTGGGGCATCAACATAAAAAAGGT
GCTGCCGAGAGGAGTCAGTGGAGATGTATACAATCTGGCTGACTGTCTGA
TGCAGCAGGCACTCATTGGTTCCACGGCTAATCCGTTGGTTCTTAACTAC
CTGAAGCATTCACTGTGCGCCCATCTCGTTTCTCACGCTGCTGTTATTCG
GTGCATTGCCAAATATGACAAATTAGAGCGCGTTTATTGCATTACAGCGC
TCCTTGAATTCCTGGCCAGCATCGTGGATGGCGTTACCTGCCGAATAAAA
TCTGAGGAAGCGGTTTTACCGAGTTCCGTCGTCCACTTGGTGTACTGGCT
GCTTCAAATCTTCGCCAGAACTGTGCAGCACTATGAACTGTATGGTGAGA
TTAGTGCTGAGCAATCATACATGCTGGACCAGACCTGCGTGGTGATAGAT
CGGCTTAGCCAGCAGCAGTTCCTGCTGTCTATGCTGTACGTGGGCTGTCA
CGAAGAGCTCGAAATATGTGGACGGATTCGGGATAAGTACGCTACCATCA
AGGGATCGTTGACGAACTCAAACTTTACGCTAAATGCACCACAAGTGGAG
CAGCAATTGCAGCAGTTGGCCTTTATAGAAGCCAAGCATCTTGAAATGCA
ACCACTTAATCCGCCGTCAACACTCGAGAAGATCTCGTGCTGCGTGCAAC
CCTTACTGGCGGTGGAAGTGCTTCTCAATCCGTGCAAGGACACCAGCTAC
TACGTGGCTGAGTTGCAGATGCTGCAACGATTAAAGAAATACTCCAATAC
ACGGCTCTTCTACGAAATCATCCGTGCTGGATTCCTCACGCTGAGCAATG
TTGCGGATACAAGTCCTGACCACTATGTGGGGTGCCTTTATGTCTTTAAA
ATGCCGCAACATCATTAAGCAATTGCACGCCCTGCACGGATTCCCGGGGA
ACAACCCCCAACGGCGAATAACTACCGAGTGGGTGGGAAGGCTTGGATGC
TCATCGAGGACATCTTGCTGTCTAACTTCATGATACTAAGTGCTCATGCA
AATGATCCAGTCTTGATGA
FMO10728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED24-RA | 3199 | CG7999-RA | 120..1227 | 9..1111 | 5045 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8193561..8194233 | 343..1015 | 3130 | 99 | Plus |
| 3L | 28110227 | 3L | 8193334..8193492 | 185..343 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 8191389..8191479 | 9..99 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 8193188..8193276 | 97..185 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:24:40 has no hits.
FMO10728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:15 Download gff for
FMO10728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 112..1225 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:11 Download gff for
FMO10728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 114..1227 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:05 Download gff for
FMO10728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 114..1227 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:05 Download gff for
FMO10728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8193335..8193492 | 186..343 | 100 | -> | Plus |
| 3L | 8191383..8191478 | 1..98 | 95 | -> | Plus |
| 3L | 8193190..8193276 | 99..185 | 100 | -> | Plus |
| 3L | 8193562..8194334 | 344..1111 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:11 Download gff for
FMO10728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8186435..8186592 | 186..343 | 100 | -> | Plus |
| arm_3L | 8184483..8184578 | 1..98 | 95 | -> | Plus |
| arm_3L | 8186290..8186376 | 99..185 | 100 | -> | Plus |
| arm_3L | 8186662..8187434 | 344..1111 | 96 | | Plus |
