FMO10736.5prime Sequence
323 bp (323 high quality bases) assembled on 2011-11-14
> FMO10736.5prime
CAGTCGACATGAAATTCCTGATCGTCTTTGTAGCAATCTTCGCTTTTGCT
TTGGCTAACGAAGCGCAAATTATTAACTTGGAATCCGATGTTGGACCCGA
AAACTTTCAGTGGTCCTTCGAGACCAGCGATGGCCAGGCGGCTAACGCTA
AGGGACAGTTGAAGTACCCTAACACCGACCACGAGTCCCTTGCTGTCCAG
GGTTCCTTCCGCTTCGTTGCCGATGATGGCCAGACCTACGAAGTCAACTA
CATCGCCGATGAGAACGGATTCCAGCCCCAGGGTGCCCATCTTCCCGTTG
CCTCCGCAAGCTTTCTAGACCAT
FMO10736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ae-RA | 476 | CG10529-RA | 39..337 | 7..305 | 1480 | 99.7 | Plus |
| Lcp65Ag1-RA | 517 | CG10530-RA | 269..371 | 204..306 | 395 | 92.2 | Plus |
| Lcp65Ag2-RA | 543 | CG10534-RA | 269..371 | 204..306 | 395 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6137722..6137911 | 305..116 | 935 | 99.5 | Minus |
| 3L | 28110227 | 3L | 6137972..6138080 | 115..7 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 6133162..6133264 | 306..204 | 395 | 92.2 | Minus |
| 3L | 28110227 | 3L | 6134843..6134945 | 306..204 | 395 | 92.2 | Minus |
| 3L | 28110227 | 3L | 6130559..6130661 | 306..204 | 380 | 91.3 | Minus |
| 3L | 28110227 | 3L | 6145205..6145289 | 212..296 | 305 | 90.6 | Plus |
| 3L | 28110227 | 3L | 6147571..6147680 | 306..197 | 295 | 84.5 | Minus |
| 3L | 28110227 | 3L | 6150442..6150551 | 306..197 | 295 | 84.5 | Minus |
| 3L | 28110227 | 3L | 6136388..6136482 | 306..212 | 265 | 85.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:15 has no hits.
FMO10736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:13 Download gff for
FMO10736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ae-RA | 1..300 | 9..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:00 Download gff for
FMO10736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ae-RA | 33..341 | 1..310 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:52 Download gff for
FMO10736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ae-RA | 33..341 | 1..310 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:52 Download gff for
FMO10736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6137718..6137911 | 116..310 | 98 | <- | Minus |
| 3L | 6137972..6138085 | 1..115 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:00 Download gff for
FMO10736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6130818..6131011 | 116..310 | 98 | <- | Minus |
| arm_3L | 6131072..6131185 | 1..115 | 97 | | Minus |
