FMO10741.5prime Sequence
332 bp (332 high quality bases) assembled on 2011-11-14
> FMO10741.5prime
CAGTCGACATGAAATTCGCCATCGTCCTGTTCGCCCTCTTTGCCGTGGCC
CTGGCTGCCCCTACTGTCGAGGTCCTGCGATCGGATAGCAATGTTGGAAT
CGATAACTACTCATATGCAGTTGAAACCAGCGACGGTACCTCGAAGAGCG
AGGAGGGTGTGCTGAAGAACGCCGGCACCGAGCTAGAGGCCATCTCAACC
CACGGCTCCTTCAGCTACGTGGGCCCTGATGGCCAGACCTACACCGTCAC
CTACGTGGCCGATGAGAACGGATTCCAGCCCCAGGGTGCTCATCTGCCCG
TTGCCCCCGTTGCCGCAAGCTTTCTAGACCAT
FMO10741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr65Ax1-RA | 389 | CG34270-RA | 49..354 | 9..314 | 1530 | 100 | Plus |
| Cpr65Ax2-RB | 732 | CG18777-RB | 48..353 | 9..314 | 1530 | 100 | Plus |
| Cpr65Ax2-RA | 388 | CG18777-RA | 48..353 | 9..314 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6147566..6147761 | 314..119 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 6150437..6150632 | 314..119 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 6147830..6147939 | 118..9 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 6150701..6150810 | 118..9 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 6133157..6133244 | 314..227 | 320 | 90.9 | Minus |
| 3L | 28110227 | 3L | 6134842..6134925 | 310..227 | 315 | 91.7 | Minus |
| 3L | 28110227 | 3L | 6130558..6130641 | 310..227 | 300 | 90.5 | Minus |
| 3L | 28110227 | 3L | 6145140..6145289 | 150..299 | 300 | 80 | Plus |
| 3L | 28110227 | 3L | 6137725..6137830 | 305..200 | 290 | 84.9 | Minus |
| 3L | 28110227 | 3L | 6136387..6136470 | 310..227 | 270 | 88.1 | Minus |
| 3L | 28110227 | 3L | 6139425..6139574 | 299..150 | 225 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6146961..6147032 | 242..313 | 225 | 87.5 | Plus |
| 3L | 28110227 | 3L | 6149832..6149903 | 242..313 | 225 | 87.5 | Plus |
| 3L | 28110227 | 3L | 6143800..6143871 | 228..299 | 195 | 84.7 | Plus |
| 3L | 28110227 | 3L | 6151536..6151619 | 203..286 | 180 | 81 | Plus |
| 2R | 25286936 | 2R | 12408286..12408333 | 251..298 | 180 | 91.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:26:13 has no hits.
FMO10741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:22 Download gff for
FMO10741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Ax1-RA | 39..357 | 1..322 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:01 Download gff for
FMO10741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Ax1-RA | 42..360 | 1..322 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:43 Download gff for
FMO10741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Ax2-RA | 41..359 | 1..322 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:43 Download gff for
FMO10741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6147830..6147946 | 1..118 | 96 | | Minus |
| 3L | 6147560..6147761 | 119..322 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:01 Download gff for
FMO10741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6140930..6141046 | 1..118 | 96 | | Minus |
| arm_3L | 6140660..6140861 | 119..322 | 98 | <- | Minus |
