FMO10748.5prime Sequence
713 bp (713 high quality bases) assembled on 2011-11-14
> FMO10748.5prime
CAGTCGACATGCGTTTCCTCATCGCTTTCTGCCTGATTGGTGCCGCATGC
GCCCAGTACAACTACGGAGCGGGATTTACCGGAGCCGCCTCCGATAATGT
TCCCAGTTACTCCGGAAGCAGTGTTGGCGACTCCTACGATGGTGCTGCCA
GCAGCCCGGACTACTCGGTCTCCAGCGAACTGAACAAGGAGTACTACACC
TTCGAGGCTGACGAGAGCCAGTTCGAGGATCCTCTGGCCGCCCAGAAGAT
CGCCGGCTCCGTGAACAAGGGACTCCGCGTGGTCTTCATCAAGGGACCCG
AAAACCGTGGCCTGGAGAACGCTGCTCTGGCCCTCGCCAAGCAGGCTGCC
GAGCAGAGGACCGCCATCTATGTCTTGAACAAGCAGACCGACATTGGAGA
TCTGGCCCAGAAATTCAATGCCGCCCGCCAGAACTCCAACCAGCGTCCTG
AGGTGCACTTCGTCAAGTACAGGACTCCCGAGGATGCGGCCAATGCCCAG
CGTGCCATCCAGTCGCAGTACGATAACCTGGGAGGATCCAGCCAGTCCAT
CAACGGAGGAGTTGCCAACGCCATCAACTTCGCCTCCGCTGCCCCCGTGG
TTCCCGCTCGTCGTGGCCCCAACTACTCCCCACCAGCCGCCGCCACGAGC
AACTCCTACCTGCCCGCCAACATCCTGCGTCGCCTGCGCATCCGTGCAAG
CTTTCTAGACCAT
FMO10748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlO-RA | 807 | CG6452-RA | 41..728 | 8..695 | 3440 | 100 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 567..914 | 252..599 | 975 | 85.7 | Plus |
| TwdlL-RA | 1002 | CG6447-RA | 498..838 | 258..598 | 880 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26626011..26626698 | 695..8 | 3440 | 100 | Minus |
| 3R | 32079331 | 3R | 26632435..26632782 | 252..599 | 975 | 85.3 | Plus |
| 3R | 32079331 | 3R | 26624751..26625091 | 598..258 | 880 | 83.9 | Minus |
| 3R | 32079331 | 3R | 26619707..26620044 | 262..599 | 820 | 82.8 | Plus |
| 3R | 32079331 | 3R | 26622641..26622981 | 598..258 | 820 | 82.7 | Minus |
| 3R | 32079331 | 3R | 26628051..26628379 | 587..259 | 730 | 81.5 | Minus |
| 3R | 32079331 | 3R | 26630293..26630572 | 259..538 | 710 | 83.6 | Plus |
| 3R | 32079331 | 3R | 26620752..26621063 | 587..276 | 645 | 80.4 | Minus |
| 3R | 32079331 | 3R | 26634164..26634450 | 253..539 | 520 | 78.7 | Plus |
| 3R | 32079331 | 3R | 26656944..26657057 | 273..386 | 285 | 83.3 | Plus |
| 3R | 32079331 | 3R | 26640644..26640706 | 450..512 | 210 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:25:43 has no hits.
FMO10748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:20 Download gff for
FMO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlO-RA | 1..690 | 9..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:42 Download gff for
FMO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlO-RA | 34..732 | 1..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:30 Download gff for
FMO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlO-RA | 34..732 | 1..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:30 Download gff for
FMO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26626007..26626701 | 1..700 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:42 Download gff for
FMO10748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22451729..22452423 | 1..700 | 99 | | Minus |
