Clone FMO10776 Report

Search the DGRC for FMO10776

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:107
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG18853-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO10776.5prime Sequence

1012 bp (999 high quality bases) assembled on 2011-11-14

> FMO10776.5prime
CAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCATCGCGCGG
AACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAGCATGTGCA
GCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTTCCGCTGCG
AGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCGCCGGCGAG
AAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAGACGGGCCA
AGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGAGGACTACG
CACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAGAGAAGCGG
GCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGTATCATCCA
ACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGAGGGACTAG
AGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCAACAATTCC
CACCCCAAGGCCAAGGCGGATAACTTTTGCTTCTACAACGAGCACTATGA
TAGTCTTAAAGGTCTAAGTTCTTGGGCATATCAAACGCTAGATGCACATC
GCAAGGACAAGCGAGATCCCTGCTACAGCTTAGAAGAACTAGAAAAGTCT
CTCACTTATGACGACCTGTGGAACTCGGCGCAACTGCAGCTGGTACGCGA
GGGAAAGATGCACGGCTTTTTGCGCATGTACTGGGCCAAAAAGATTCTGG
AATGGACAGCGACACCGGAGCATGCGTTGGAGTACGCAATCCTGCTGAAC
GACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCTATGTGGGCTGCAT
GTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGAGCGGGCTATCTT
CGGTAAGGTTAGGTACATGAACTATCAGGGATGCCGTCGCAAATTCGATG
TAAATGCCTTTGTCATGCGATACCGCGGTAAGTGCACAAGAAGAAAGCAA
GCTTCTAGACAT

FMO10776.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18853-RA 1157 CG18853-RA 133..1122 9..996 4885 99.7 Plus
CG12822-RB 1468 CG12822-RB 134..641 9..516 2540 100 Plus
CG12822-RA 1522 CG12822-RA 134..641 9..516 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7829590..7829981 256..647 1960 100 Plus
2R 25286936 2R 7826932..7827284 646..996 1650 99.2 Plus
2R 25286936 2R 7830042..7830394 646..996 1650 99.2 Plus
2R 25286936 2R 7832700..7832960 256..516 1305 100 Plus
2R 25286936 2R 7832453..7832642 68..257 950 100 Plus
2R 25286936 2R 7829343..7829532 68..257 950 100 Plus
2R 25286936 2R 7826739..7826871 515..647 665 100 Plus
2R 25286936 2R 7829194..7829256 9..71 315 100 Plus
2R 25286936 2R 7832304..7832366 9..71 315 100 Plus
Blast to na_te.dros performed 2014-11-27 20:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6891 58..241 164 59.3 Plus

FMO10776.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:41:44 Download gff for FMO10776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18853-RA 130..1130 1..1000 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:04 Download gff for FMO10776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18853-RA 125..1125 1..1000 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:28 Download gff for FMO10776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18853-RA 125..1125 1..1000 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:28 Download gff for FMO10776.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7829186..7829255 1..70 95 -> Plus
2R 7829346..7829532 71..257 100 -> Plus
2R 7829592..7829981 258..647 100 -> Plus
2R 7830044..7830397 648..1000 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:04 Download gff for FMO10776.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3716851..3717037 71..257 100 -> Plus
arm_2R 3716691..3716760 1..70 95 -> Plus
arm_2R 3717097..3717486 258..647 100 -> Plus
arm_2R 3717549..3717902 648..1000 98   Plus